Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03502 ATGGATTCCAACAACAAATCTTCCGATCAAGTAATTTCAGAAATGGTTGAAATGGGTTTTGAGTATTCCAAAGTTCTTGAAGCAATTAAAGTAGTGGGTCTATCGATTCCAAGCATTGTGGAACATATTTTCAATACTAGTACTAGTGGTAGTAGCAGTAATGGCGTTACCCACTTCTCAAAATCGCTTCCAAATAATGGGAAAGCTCTCAAAAAACGAGCTTTTTCATCTTCTGTTCAAGTTCCAAAATCGAGAACAATCAGCCATTATTTCCAATCTACTAATAAAGTtaatgagaaaaacaaaaatgttgttgttgatgttgatgatgatggtgatgatgtgGAAGAGCATAATGAGTCTTTACCTCAAATGGGATTTGATCTTGATCCGAATATTGCGTCTGATTGGGAGATGAGAGCTAGCATTCTGCTGCAAAAGCATTTTGGTTTTTCATCCTTGAAAAGTTTTCAGAAGGAAGCTCTGTCTGCTTGGATTGCTCAAAGAGATTGTCTTGTCCTAGCTGCTACTGGATCTGGGAAATCTCTATGCTTTCAGATTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATTTCGCCTTTAATAAGCCTAATGCATGATCAATGCTTAAAGCTAACAAAACATGGAATCAGTGCTTGTTTTCTTGGCTCTGGGCAGCCTGATAATACTGTTGAAAAGAAAGCAATGAGAGGCATgtatagtatagtatatatTTGCCCAGAGACGGTTCTAAGATTGATTCAACCTCTGCAAAAGCTTGCAGAAAGCCATGGTATTGCTTTGTTCGCAATTGATGAGGTACATTGTGTTTCTAAATGGGGCCATGATTTTCGTCCAGCTTACAGCCGACTGTCTGCATTGAGGGAAAATTTCACTACTGGCAAGCTAAAATCCTTGAAATTTGATATACCTGTAATGGCATTGACAGCTACAGCCACAAAGAGAGTTCGGGAAGACATTTTAAAATCGCTGCGTATGTCAAAAGATACAAGTGTTGTTCTCACATCATTTTTTCGACCTAATTTACGTTTCATGGTAAAGCATAGCAGAACATCATGGGCTTCTTATGAGAAAGATTTTCATGAATTGGTTAAAGTATATGGTGGAAATAAAAAAGCTTTCACCTCAGATGATGCAGATGATGTTTCCATTTACTCTGATGATTCTGATACAGACAGTGTTTCTTCTGATAATGTGGACGACGACCAAGATGACTCAGGAAACGCCGGCaatcataaaaaaagaagaaaattgacAATTGAGTTCCTGGAAAATGATGTTGATGTCTTTCAAAGTGCGGATGACTTGGATGTTACCTGCGGTGAATTTTGTGCACAACCTCCTCCGAAGCAATGTGAGTTATCCGGGACAATTGATCCACCCACAAAACCAGAAAAAAGACTCAAAATGCTTAAGGAGCCTTTGGAACGAGGACCAACAATTATTTATGTACCCACCAGAAAAGATACAGTGAGAATTGCAAAGTATCTATGCAAGTCTGGTGTGAAAGCTGCTGCTTACAACGCTGGGCTGCCCAAGTCGCATCTAAGAAAGACTCATAAAGAGTTTCATGAAAATACCTTAGAGGTTGTTGTTGCAACAATAGCATTTGGAATGGGAATTGACAAATCGAACGTTAGAAGAATCATCCACTATGGTTGGCCGCAGAGTTTGGAAGCCTACTATCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCATTCTATATGCAAACCTAGCAAGGAAGCCATCACTTTTACCAAGTCGTAGAAGTGAAGAAATGACTAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGTTGTCGAGCAAAAACACTTGTAGAATACTTCGGAGAGGATTTCAGCCATCAGAAATGCCTCTTATGTGATGTGTGCGCTAATGGACCACCTCAAAGACAGAATCTAAAAGAGGAGGCCTGTATTTTACTGCAAACTATAGGGGCTCATAATGCACGTGTATATTCCATGGATTCCTCATATAATGATGATATCCATTTCGATTCCAAGAATAGAAGACTAGGAGAGAGGCCAAGTCTTATGACGTTGGTTAGAAGTATAAGGGAACAGTTTCAAAAGTTTTTAACCACTGATATATTGTGGTGGAGAGGCCTTAGTCGAATTTTGGAAGCTAAAGGATATATCAGGGAAGGAGATGATAAGACCAATGTTCAGATAAAATACCCCGAGCTAACAGAACTAGGTTTGGAATTTGTGAAGTCCATGAATGAAGAAACTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGAAACAAACACTGACAAACCATTTTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCCGAGATCCGTCGCCAGCGCCTAGAAAGAATGCAACAAGATAGAAGTCCAACGAAGCGAAAGAGCCCCAGAAAGCAAAAAAGGAGGAGAGGTAAAAAAGCGAAACCTGATTTGAAGACTTCTCGAGGTAGACTAACAGCAAAACTCACAAAACATAAGTGA 2568 0.3855 MDSNNKSSDQVISEMVEMGFEYSKVLEAIKVVGLSIPSIVEHIFNTSTSGSSSNGVTHFSKSLPNNGKALKKRAFSSSVQVPKSRTISHYFQSTNKVNEKNKNVVVDVDDDGDDVEEHNESLPQMGFDLDPNIASDWEMRASILLQKHFGFSSLKSFQKEALSAWIAQRDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLTKHGISACFLGSGQPDNTVEKKAMRGMYSIVYICPETVLRLIQPLQKLAESHGIALFAIDEVHCVSKWGHDFRPAYSRLSALRENFTTGKLKSLKFDIPVMALTATATKRVREDILKSLRMSKDTSVVLTSFFRPNLRFMVKHSRTSWASYEKDFHELVKVYGGNKKAFTSDDADDVSIYSDDSDTDSVSSDNVDDDQDDSGNAGNHKKRRKLTIEFLENDVDVFQSADDLDVTCGEFCAQPPPKQCELSGTIDPPTKPEKRLKMLKEPLERGPTIIYVPTRKDTVRIAKYLCKSGVKAAAYNAGLPKSHLRKTHKEFHENTLEVVVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANLARKPSLLPSRRSEEMTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHQKCLLCDVCANGPPQRQNLKEEACILLQTIGAHNARVYSMDSSYNDDIHFDSKNRRLGERPSLMTLVRSIREQFQKFLTTDILWWRGLSRILEAKGYIREGDDKTNVQIKYPELTELGLEFVKSMNEETFYVYPEADMLLETNTDKPFSSFSEWGKGWADPEIRRQRLERMQQDRSPTKRKSPRKQKRRRGKKAKPDLKTSRGRLTAKLTKHK 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03502 855 Pfam Helicase conserved C-terminal domain 471 579 IPR001650 -
Tsu01g03502 855 MobiDBLite consensus disorder prediction 822 839 - -
Tsu01g03502 855 CDD DEXHc_RecQ 145 345 - -
Tsu01g03502 855 SMART ultradead3 150 355 IPR014001 -
Tsu01g03502 855 MobiDBLite consensus disorder prediction 810 855 - -
Tsu01g03502 855 MobiDBLite consensus disorder prediction 392 412 - -
Tsu01g03502 855 Gene3D - 114 346 IPR027417 -
Tsu01g03502 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 590 IPR027417 -
Tsu01g03502 855 Pfam RecQ zinc-binding 602 652 IPR032284 -
Tsu01g03502 855 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 144 372 IPR004589 GO:0004386|GO:0006310
Tsu01g03502 855 Gene3D - 465 589 IPR027417 -
Tsu01g03502 855 MobiDBLite consensus disorder prediction 392 420 - -
Tsu01g03502 855 Gene3D - 592 775 IPR036388 -
Tsu01g03502 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 338 IPR014001 -
Tsu01g03502 855 SMART helicmild6 499 580 IPR001650 -
Tsu01g03502 855 Gene3D - 2 50 - -
Tsu01g03502 855 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 2 843 - -
Tsu01g03502 855 Pfam DEAD/DEAH box helicase 157 325 IPR011545 GO:0003676|GO:0005524
Tsu01g03502 855 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 843 - -
Tsu01g03502 855 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Tsu01g03502 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 633 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03502 Tsu-Chr1 43046895 43053071 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03502 474 598 Eukaryotic Initiation Factors Gene Family AT5G11170 26.400 3.08e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03502 K10900 - gmx:100793222 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03502 01 43046895 43053071 Tsu01g03502 01 43046895 43053071 ECH