Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03497 ATGGTGACCGGAACAAACGAAACCGCACCAAAAGAAACCACACGCGAATTCGTACAAGAAGAAAGTGAAGACCAAAGTTTCGAAGAGTTAGGGTTAGACGCACGTCTCGTTCGTGCTTTATTGAAGAAAGGAATCGAGAAACCAACTCCAATTCAACACGTAGCGATTCCATTGATTCTGGAAGGTAAAGATGTTGTTGCTAGAGCAAAGACTGGTTCTGGAAAAACACTTGCGTATCTTCTTCCATTGCTTCAGAAATTGTTTACTAGTAATGCTGATAGGAAGAAGTTAGCTCCTAATGTTTTTATTCTTGTTCCTTCTCGTGAACTTTGTCAACAGATATATGTGGAAGTGAAGTCATTGCTTGAGCTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAATATGCTTGCTACTGACTTGCAAGCAGCTCTGGTTGGACCTCCTGATGTTTTGATCTCCACTCCTGCTTGCATAGCTAAGTGTTTGTCCAATTCAGTACTTGATGCGGCATCCATCAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGACATTAAAGCTTTAACACCTCACGTTCCCAGAAGTTGCCAGTGTCTTCTCATGTCAGCAACATCAAGTGCCGATGTTGACAAACTAAAAAAGTTGATTTTACACAATCCCTTTATTTTGACTTTGCCTGAAGTGGGAAACCATAAGGACGAGGTCATCCCTAAAAATGTTCAGCAGTTCTGGATTTCTTGTCCTGCCAATGATAAGTTGCTCTACATCCTTGCTATGTTGAAGTTGGAGttagtccaaaaaaaagttCTGATATTCACCAATAACATAGATACGAGTTTCAGATTGAAACTATTCTTAGAAAAGTTTGGGATCAAGTCGGCTGTTTTAAATGCTGAATTGCCTCAGAACTCCCGTCTCCATATTCTTGAGGAATTCAATGCCGGCCTATTTGATTATCTAATTGCAACAGATATCAGCCAGTCAACTGATAAGGTTGAAGCACCTAAGGAAAATATTGTTGGATCAAAAAAGTCTAGAAAGTACAAGAAGCTAAAAATAGATTCTGAATTCGGAGTAGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCGCAATGTGGCTGGATACGTACACCGAATTGGACGTACTGGAAGAGCATATAGTTCCGGTACTTCTATCTCCTTGGTTTCTTCAGATGAGATGGATACCTTCGAAGAAGTACAATCTTTTGTTGGGGACAATGAAAACACTGGCTCAAACACAATTGCCGAGTTTCCCTTACTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCAGAGAATCACGAGCCCAGGATTTGAGGAATGaaattttgaactctgaaaaGCTGAAGGCCCACTTTGAAACTAATCCAAAAGACCTAGATCTATTGAAACATGACAAAGTTTTGAGCAAGAATGCCCCTCCTCCACACCTTCGGGATGTCCCGGATTACCTAATagacaaaacaacaaaagaggCAAGAGACATGGTTAAGCTTACAAGAGATGCAAtgggtaataataataatcgcCGACGGGGATCAAAGAGAAAATCAAGAAAAGGTGGTGACCCTCTGATGGCCATGTCTACTGGGGTATCAAAAAGACCAAACAAAGGTTTTAAAAAGGACGGTGGAAGCAATGGCAAAAGCAGTGATAGACAAAAACGCAAAAAGACAAAGGCATTTTGA 1815 0.3895 MVTGTNETAPKETTREFVQEESEDQSFEELGLDARLVRALLKKGIEKPTPIQHVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTSNADRKKLAPNVFILVPSRELCQQIYVEVKSLLELCRVQLKVVQLNSNMLATDLQAALVGPPDVLISTPACIAKCLSNSVLDAASINGSLETLVLDEADLLLSYGYENDIKALTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPANDKLLYILAMLKLELVQKKVLIFTNNIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDISQSTDKVEAPKENIVGSKKSRKYKKLKIDSEFGVVRGIDFKNVYTVINFEMPRNVAGYVHRIGRTGRAYSSGTSISLVSSDEMDTFEEVQSFVGDNENTGSNTIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPKDLDLLKHDKVLSKNAPPPHLRDVPDYLIDKTTKEARDMVKLTRDAMGNNNNRRRGSKRKSRKGGDPLMAMSTGVSKRPNKGFKKDGGSNGKSSDRQKRKKTKAF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03497 604 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 11 592 - -
Tsu01g03497 604 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g03497 604 Pfam DEAD/DEAH box helicase 49 226 IPR011545 GO:0003676|GO:0005524
Tsu01g03497 604 Gene3D - 241 446 IPR027417 -
Tsu01g03497 604 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 53 IPR014014 GO:0003724
Tsu01g03497 604 SMART helicmild6 294 408 IPR001650 -
Tsu01g03497 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 237 IPR014001 -
Tsu01g03497 604 Pfam Helicase conserved C-terminal domain 265 408 IPR001650 -
Tsu01g03497 604 MobiDBLite consensus disorder prediction 541 604 - -
Tsu01g03497 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 454 IPR001650 -
Tsu01g03497 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 433 IPR027417 -
Tsu01g03497 604 CDD DEADc_DDX56 32 239 - -
Tsu01g03497 604 PANTHER RNA HELICASE 11 592 - -
Tsu01g03497 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 238 IPR027417 -
Tsu01g03497 604 SMART ultradead3 44 257 IPR014001 -
Tsu01g03497 604 Gene3D - 3 239 IPR027417 -
Tsu01g03497 604 Coils Coil 478 498 - -
Tsu01g03497 604 MobiDBLite consensus disorder prediction 578 594 - -
Tsu01g03497 604 CDD SF2_C_DEAD 254 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03497 Tsu-Chr1 43016456 43023711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03497 26 448 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 2.93e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03497 K14810 - gmx:100800749 956.436