Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03496 ATGGATCACGCAAGATCGAACAACATCGATGAGAATGTAGGAATTCCAGACGATTTACGTTGCAAGAGATCAGATGGTAAACAATGGAGATGTACAGCTTTATCTATGCCAGATAAAACAGTCTGTGAGAAGCATTACATTCAAGCTAAGAAAAGAGCAGCGAATTCTGCCATGAGAGCTAATCTTAAGAAATCTAAACCTGATTCTGATGTTAATTTAGAAAGTAAGAGTGATGATTTTGATGCTCCAGTTTCTACTACTGTTAACAATAATCAAAatcgttcttcttcttcttctgggAAGAAGTTGTTTGATAAAGTTTCTAAGAATCAGTTTCGTTATACTCCCGAGGGACTTATTGGTTCATCTGCCGGTGGTAATACTTCGAAGGTTAGTGGTGGTGATGGTGATGGTGATAATTCTCCTGATGGTGTTGATGATGAGGATGCTGTTATGTTAGAAGAGAATTGGGTTTCTAATGATGAGCTGGCTGGTTCTGGTAATGATGATTCAGCTGGGAAAATTACGCACGCGAGTCATGATGGGAATGCTGCTACTGAATATTCTGATGGAGCGTCGGATTCATCTCAAGAGAATGGCGGGCAGACTTGTCATCAATGCAGGAAGAGTGTTAGAGATAGAGTTACTTGGTGCCTTAAGTGTGATAGAAGAGGATATTGTGATAGTTGTATATCAACATGTTATTCTGACATTTCGTTGGATGAAATTCAGAAGATATGTCCTGCATGCCGTGGTATATGCAATTGTAAAATTTGTTTACGTAGTGATAATTCAATAAAGGTTCGGATACGTGAGATACCTGTATTGGATAAGTTACAGTATCTTCACGTGCTGCTCTCGTCAGTGCTTCCTGTGGTAAAGCAGATCCACAACGAACAATGTTTTGAAGTTGAACTTGAAAAGAAGTTGCGAGGTGCTGAAATAGATCTTCCGAGGACAAAATTGAATGCAGATGAGCAGATGTGCTGCAATTTGTGTAGGATACCTATCACCGATTATCATCGACGCTGTCCAAGTTGTTCATATGATTTGTGCCTTATTTGCTGTCGAGATCTTAGGGAAGCCACTGTACATCAGAGTAACGAACCTCAAACAGAGCATGCAAAAACTACTGAGCAAAACCTATTAAGCAAGTTTCCTCATTGGAGATCAAATGAGAATGGAAGTGTTCCATGCCCCCCTAAGGAGTATGGTGGTTGTGGTTATTCATCATTAAATTTAAGTCGTATTTTCAAGATGAATTGGGTAGCAAAATTGGGAAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATGAGTGATGTTGATGGTCCACCAGAAACCGGATTGAATTCTCTCCGACTTTGCCAATATTCTCAAAGAGAGAATAGCAATGATAATTATCTTTATTGCCCAACATCTGAAGATCTCAAAACTGATGGGATTGGTATGTTTAGAATGCACTGGAAAACTGGTGAGCCCATTATTGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGCTGGGATCCATTGGTCATATGGAGAGGGATTCTAGAGACAACAAACGCGAATACGAAAGATGATAACAAAATGGTTAAAGCCATAGATTGCTCAGATGGATCTGAGATTGATATCGAGCTTGGTCAGTTCATGAAAGGATATTCTGAGGGGTGTATTCTTGAAAATGGTTCGCCACAACTATTGAAACTCAAGGATTGGCCTTCACCTAGTGCATCTGAAGaatttcttttgtatcaaaGACCTGACTTTATCAGCAAATTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAGTTGCCTCATTACTCATTGCAGAATGATGTAGGACCCAAGATCTATATATCCTATGGGATTAGTGATGAACTTGGCAGAGGTGATTCTGTGACAAAACTCCACTTCAATATGTGTGACATGGTGTACCTTTTGGTCCATACAAGTGAAGTGAAGCTGAAGGACTGGCAGAGACCTAAAGTTGAAATTATGCAGAAAACTTATAAGGAATCTGAGGTGAATGAATCTCATGGGGATCCAAATATATGTTCAAGAGGGATTTCACCCGATTCATCTCTATGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAGGATTCAACTATGGATCAAGGGTTTGAAGTTTATTCTAGTGCTGGTGGTGGGAATACGGTCAATTGTGAAATTCCATCAAGACAAAATGGGGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGAtgttccaaaggtgactgaatatttgaaaatgcaTTGGAAGGAATTCGGGAAGTCAGATGATATAGTAAGTGAATTTGTAAGTCTTACAAAATAA 2397 0.3842 MDHARSNNIDENVGIPDDLRCKRSDGKQWRCTALSMPDKTVCEKHYIQAKKRAANSAMRANLKKSKPDSDVNLESKSDDFDAPVSTTVNNNQNRSSSSSGKKLFDKVSKNQFRYTPEGLIGSSAGGNTSKVSGGDGDGDNSPDGVDDEDAVMLEENWVSNDELAGSGNDDSAGKITHASHDGNAATEYSDGASDSSQENGGQTCHQCRKSVRDRVTWCLKCDRRGYCDSCISTCYSDISLDEIQKICPACRGICNCKICLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHNEQCFEVELEKKLRGAEIDLPRTKLNADEQMCCNLCRIPITDYHRRCPSCSYDLCLICCRDLREATVHQSNEPQTEHAKTTEQNLLSKFPHWRSNENGSVPCPPKEYGGCGYSSLNLSRIFKMNWVAKLGKNVEEMVSGCRMSDVDGPPETGLNSLRLCQYSQRENSNDNYLYCPTSEDLKTDGIGMFRMHWKTGEPIIVKQVFDRSSMSSWDPLVIWRGILETTNANTKDDNKMVKAIDCSDGSEIDIELGQFMKGYSEGCILENGSPQLLKLKDWPSPSASEEFLLYQRPDFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTKLHFNMCDMVYLLVHTSEVKLKDWQRPKVEIMQKTYKESEVNESHGDPNICSRGISPDSSLCTKINGLDLESDQKDSTMDQGFEVYSSAGGGNTVNCEIPSRQNGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDIVSEFVSLTK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03496 798 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Tsu01g03496 798 SMART cupin_9 584 798 IPR003347 -
Tsu01g03496 798 Gene3D Cupin 459 797 - -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 116 147 - -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 79 104 - -
Tsu01g03496 798 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 116 135 - -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 57 104 - -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 182 203 - -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 161 203 - -
Tsu01g03496 798 Pfam WRC 16 56 IPR014977 -
Tsu01g03496 798 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 8 788 IPR045109 GO:0032454|GO:0033169
Tsu01g03496 798 PANTHER JMJC DOMAIN PROTEIN JMJ24 8 788 - -
Tsu01g03496 798 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 199 264 IPR018866 -
Tsu01g03496 798 MobiDBLite consensus disorder prediction 63 77 - -
Tsu01g03496 798 SUPERFAMILY Clavaminate synthase-like 486 779 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03496 Tsu-Chr1 43010963 43014614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03496 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.01e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03496 K15601 - gmx:100801287 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03496 01 43010963 43014614 Tsu01g03496 01 43010963 43014614 ECH