Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03494 ATGTCAAACATCACAAGCTGTGATAGTGGTAGTTTCTCTACAGAGAATAACAGAGAAGATGGAGTTAAACAGTTACAACAAACTGAAATACTTGGTCAATTTCATAGTCCACATTCTCATACTTCAACAACTAATAATAACAGCAATGGTTCCAACACTAATTTACAACCACCTCTTAAGAGGAAAAGGAACCTACCAGGAAATCCAGATCCAAGTGCTGAAGTGATAGCACTATCACCAACAACACTAATGGCTACAAACAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAAAACCTTCAATTGCACCGAAGAGGACACAATTTACCATGGAAGCTTAAACAAAGAACAAgtaatgaaattataaaaagagtTTATGTTTGTCCTGAACCTTCATGTGTTCATCATAATCCAGCAAGAGCACTTGGTGATCTTACCGGTATTAAAAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAAATTTGTGGTACAAGGGAATACAAATGTGACTGTGGAACTATATTTTCAAGAAGAGACAGTTTCATAACTCACAGAGCATTCTGTGATGCATTAGCTGAAGAAAACAACAAAGCAAACGAAGGATCAATACAATTATCAAACttacaacaacatcaacaaatccCAAATCTTGTTTCTTCATTATTACCTATAAACCCTCCACAAATTGGTGTAACTTCATCAGAAATATTCAACACTGATCATAAGCATTCATTATCATCACCTCATGATCTCATGTCAGTGCCTGCAAAACAATTCAACAATAACATTTTCACTAGAAGTCTTTCATCATCAACTTCATCTCCTTCTCTTCAACTTAGTTCAAATAATTCACTCAACAATATCTTAGAAGAAAATGGTTCACTTCATTTATCTGCTGCAACTTCACCTCATATGTCAGCTACTGCATTGCTTCAAAAAGCTGCTCAAATGGGTGCAACTGTGAGTAATAATAATGCCGGTATGAGTATGCCGGAAAAAACCGTTTCTGCAAACATGATGGCACCGCCGTTGTTCGGTGTCGCGCAACAACAAGGACATGCTTTCATGAATCACTTCAtgcaacagcagcagcagcaacaagctcagtataataatagtaataatttcaATGCAAGTGGGATGATTAATGGAGGAAGTGTTAATGGATCAATGAATGGAGTTGATATGTTTAATGCTATATTGGATCAAAGTAAGGCTTTATCCAAGATTATagaacaaaataatcaaactcaAAGCAGTGTTGGAGGTGTAGGAGTAGGAGGAGGAGGGGGCGCATCAAGTAATAATAATGTTGTTATGAACATTGGTGGAAGTAAAGGAAGTGGTGGAGATGTAATGACATTGGATTTGTTAGGGATAGGAGGGGGAGGTGCACATGGTAATTTCTATGGAGGAGGGGGTACACAGCAGCAACAAGCAGAAAGTGCTGCTGCAGCAGCTGATGAAGTTTGGAGAAATTGGTCAACTAAGAATGGAGGATTTGAATCATTTTCAGCAACAAGCAACatttga 1608 0.3501 MSNITSCDSGSFSTENNREDGVKQLQQTEILGQFHSPHSHTSTTNNNSNGSNTNLQPPLKRKRNLPGNPDPSAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSNEIIKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGSIQLSNLQQHQQIPNLVSSLLPINPPQIGVTSSEIFNTDHKHSLSSPHDLMSVPAKQFNNNIFTRSLSSSTSSPSLQLSSNNSLNNILEENGSLHLSAATSPHMSATALLQKAAQMGATVSNNNAGMSMPEKTVSANMMAPPLFGVAQQQGHAFMNHFMQQQQQQQAQYNNSNNFNASGMINGGSVNGSMNGVDMFNAILDQSKALSKIIEQNNQTQSSVGGVGVGGGGGASSNNNVVMNIGGSKGSGGDVMTLDLLGIGGGGAHGNFYGGGGTQQQQAESAAAAADEVWRNWSTKNGGFESFSATSNI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03494 535 Gene3D Classic Zinc Finger 89 133 - -
Tsu01g03494 535 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Tsu01g03494 535 MobiDBLite consensus disorder prediction 1 74 - -
Tsu01g03494 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 510 - -
Tsu01g03494 535 SMART c2h2final6 130 160 IPR013087 -
Tsu01g03494 535 SMART c2h2final6 165 185 IPR013087 -
Tsu01g03494 535 SMART c2h2final6 89 111 IPR013087 -
Tsu01g03494 535 MobiDBLite consensus disorder prediction 1 59 - -
Tsu01g03494 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Tsu01g03494 535 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 5 510 - -
Tsu01g03494 535 Gene3D Classic Zinc Finger 158 230 - -
Tsu01g03494 535 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Tsu01g03494 535 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03494 Tsu-Chr1 43002697 43006304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03494 51 347 IDZ Gene Family AT3G50700 56.325 5.20e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g03494 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03494 - - gmx:100813556 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03494 01 43002697 43006304 Tsu01g03494 01 43002697 43006304 ECH