Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03493 ATGAACGGTGCTGAAGGAGACAAAACATTGCCAATAGCAAATGTTGGTAGAATAATGAAACAAAGTCTTCCTCCCAATGCAAAGATCTCAAAAGAAAGCAAACAACTGATGCAAGAATGTGCGACAGagttcataagttttgtgaCAGGTGAAGCATCTGACAAGTGTCACAAAGAGAATCGAAAGACTGTTAGTGGAGATGACATCTGTTGGGCTCTTTGTTCATTAGGGTTTGATAACTATGCTGAAGCCATTGGAAGGTATTTGTATAAATACAGACAAGCTGAACTTGTTAAGTTGAATCAGAACAAACTTGAGACAGCAAAAGACAAAGTTTGA 339 0.3658 MNGAEGDKTLPIANVGRIMKQSLPPNAKISKESKQLMQECATEFISFVTGEASDKCHKENRKTVSGDDICWALCSLGFDNYAEAIGRYLYKYRQAELVKLNQNKLETAKDKV 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03493 112 SUPERFAMILY Histone-fold 7 99 IPR009072 GO:0046982
Tsu01g03493 112 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu01g03493 112 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 9 73 IPR003958 -
Tsu01g03493 112 Gene3D Histone, subunit A 1 112 IPR009072 GO:0046982
Tsu01g03493 112 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu01g03493 112 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4 1 109 - -
Tsu01g03493 112 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Tsu01g03493 112 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Tsu01g03493 112 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03493 Tsu-Chr1 42979993 42980331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03493 7 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.449 6.86e-52 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu01g03493 CBFD_NFYB_HMF 5.7e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03493 K08065 - pvy:116118424 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03493 01 42979993 42980331 Tsu01g03493 01 42979993 42980331 ECH