Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03489 ATgGCAGAACCTGCGATTGCTTTGGGTCTCATTCGGGATGGTGCTTTGCAGAATGCTACTGCGGCTGAGCCTGGTGCGGCGCTAATTGATCAAATGCAGGCAGAACCTGCGATTGCTTTGGGTCTGATATGGGTTGGTGCTTTGCAAAATGCCACAGCGGCTGAGCCTGGTAGTTGGGAGTGGATGCTGGTGAACCTCTTGGGGAGTGTATGTTCCCTAATTGATGGACAACCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCCATGCTTTTCACTATTTCATTTCGAATTTGCGAATACCATTTATTCCTCTTGGATGCTGCAAACTgctttgtttattgtttttatctgtattttaaatttttcattgataGGAATGAAAAAAACCAGCTTCTTTTGGGAATCCGTCGAGCTAGTCGGCCACAAACTGGTATGCCATCATCAGTTCTTTCCAGTGATGGTATGTACATTGGACTTCTTGCAGCTGCAACAACTAATAGCTGTTTTACAATGTTCTTTAATCCAAGTCCATCCGAGTTTGTCATACCACTTTCAAAGTATATAAAAGTTGTGTACCATACACGTGTTTCTGTTGGTATGCGCTTCAGGATGCTTTTTGAAACTGAAGAATTAAGTGTGCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCGGTTTGGTGGCCGAATTCTCATTGGAGATCTGTTAAGGTCAGTTGGGATGTATCCATCACTATTTTCTCTTAG 795 0.4176 MAEPAIALGLIRDGALQNATAAEPGAALIDQMQAEPAIALGLIWVGALQNATAAEPGSWEWMLVNLLGSVCSLIDGQPKRHLLTTGWSVFVSAKRLVAGDSMLFTISFRICEYHLFLLDAANCFVYCFYLYFKFFIDRNEKNQLLLGIRRASRPQTGMPSSVLSSDGMYIGLLAAATTNSCFTMFFNPSPSEFVIPLSKYIKVVYHTRVSVGMRFRMLFETEELSVRRYMGTITSISDMDPVWWPNSHWRSVKVSWDVSITIFS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03489 264 Pfam Auxin response factor 175 253 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu01g03489 264 Gene3D - 208 263 - -
Tsu01g03489 264 PANTHER AUXIN RESPONSE FACTOR 8-LIKE 74 105 - -
Tsu01g03489 264 PANTHER AUXIN RESPONSE FACTOR 8-LIKE 135 259 - -
Tsu01g03489 264 SUPERFAMILY DNA-binding pseudobarrel domain 74 120 IPR015300 -
Tsu01g03489 264 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 74 105 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g03489 264 Gene3D - 53 151 IPR015300 -
Tsu01g03489 264 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 135 259 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03489 Tsu-Chr1 42953274 42961577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03489 76 259 B3 DNA Binding Superfamily AT5G37020 66.842 6.70e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03489 - - lang:109356722 249.595