Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03486 ATGCGACGCGGCTTCTCCCTCTCACCCAGCAAACTCGCTCCGCGGCTTCTCCTCTCTCCCCTTCTACGCTCCGCCGGTCTCCGCCCTCCCTGCTCCGCCGCCACCGTGTATTTGTCTCCATTGCGCTGCGCCAAAAATCAAATTGACTATATCTTGTGCCCACTGCCACCACACCACACTGTGATTCTGAATAGTGAAGCACTCACCGTCGCCAAACGCCTTCGCCATTGCTGTTGCATACATTCATTAGCACTGCCTGCGTTCAAACACAGAGTTACCTCTACCCACCGATCCAAGTGGATCTTCTCTCCTCAAAAACTGGTTGAGAAATATACAGATGCTAATCAGAGAGCCAAACAAACTCTAGAGCAGTGTGGAGCAACTCTAATGGAAGTAGATGCTGATGGGTCATTGTCATATCCAGAATCCCAGACGACTGCAAACAACAGTGGTGAAAAACATTCTCGGATAAAACCTCTTAGTATTGAAGAGGAGCAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTGTGCAACAATTTCCACTTCCCTCATAAGATCCAGGCAACAGCcctcatattttttaaaaggttCTATCTGCAATGGTCAGTGATGGAACATCaaccaaaaaatataatGTTGACATGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTTCACAAGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTCTGGAATTTGATCTTATTGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCCGGTGAGGATGAGCTTCAAATGCTCAAGGCTTTGCAAAATACAGCAAGACTGGAAGTTGATAAAATGATGCTTACAGATGCACCACTGTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCACTGCGTACCTCAAATGCTCTCCATAAAGTTCTGGACTTTGATAGTTTTCTGAGCAGAATTTTTTCCCATCAGAGTTCTACACACACAATGGCTGAGCTTCTTGAATCATTGGATGCAATTGATTCTTGGGTTAGAAAATATAGAAGTCCTTCAGAGAAGGAATTGAAGCATATCAACCGGAAACTGAAGTCTTGTTGGGGTCAGAGCTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAACGAAGCACAAAATGCTTAG 1257 0.4288 MRRGFSLSPSKLAPRLLLSPLLRSAGLRPPCSAATVYLSPLRCAKNQIDYILCPLPPHHTVILNSEALTVAKRLRHCCCIHSLALPAFKHRVTSTHRSKWIFSPQKLVEKYTDANQRAKQTLEQCGATLMEVDADGSLSYPESQTTANNSGEKHSRIKPLSIEEEQCIKVFYENKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFTDYMEEFCNAGEDELQMLKALQNTARLEVDKMMLTDAPLLFPPGQLALAALRTSNALHKVLDFDSFLSRIFSHQSSTHTMAELLESLDAIDSWVRKYRSPSEKELKHINRKLKSCWGQSSHDEGKKREKKSKHKSRKSSNEAQNA 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03486 418 Pfam Cyclin C-terminal domain 266 365 IPR031658 -
Tsu01g03486 418 MobiDBLite consensus disorder prediction 389 418 - -
Tsu01g03486 418 Pfam Cyclin, N-terminal domain 176 261 IPR006671 -
Tsu01g03486 418 SMART cyclin_7 174 255 IPR013763 -
Tsu01g03486 418 PANTHER CYCLIN 93 416 IPR043198 GO:0006357|GO:0016538
Tsu01g03486 418 CDD CYCLIN 176 235 IPR013763 -
Tsu01g03486 418 SUPERFAMILY Cyclin-like 153 263 IPR036915 -
Tsu01g03486 418 Gene3D - 150 262 - -
Tsu01g03486 418 Gene3D - 264 369 - -
Tsu01g03486 418 PANTHER CYCLIN-H 93 416 - -
Tsu01g03486 418 SUPERFAMILY Cyclin-like 266 392 IPR036915 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03486 93 367 Core Cell Cycle Gene Families AT5G27620 62.909 5.78e-127 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03486 K06634 - gmx:547736 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03486 01 42933864 42939614 Tsu01g03486 01 42933864 42939614 ECH