Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03485 ATGGCACCGACAAGGAAATCTAGAAGTGTGAATAAGCGGTTTGCAAACGACGTTTCTCCTGAGAAAGATGGAGTTAgctcaaataaaaacaaacccAAGAAGAAGAAATTGTCTGATAAATTGGGATCTCAGTGGAGCAAGGAGGAGCTACAGCGATTCTATGAGGCATACAGAAAGTACGGGAAAGATTGGAAGAAGGTTTCTGCTGCGATACGTAACAGATCCATTGAAATGGTTGAAGCTCTTTACAATATGAATCGGGCATATCTATCTCTACCAGAGGGCACGGCTTCTGTTGTAGGTCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGACAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAAGTTCAGCTTAGTGTCTCAAAGGATCCTGTCCAGTCTCAGTCTGTAACTTCCGGTGATGGCTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTATCCAGCCTCGTGCTGTTGGGAAAAGGACACCCCGAGTCCCAGTTTACCACTCCTACAAGAAAGATGAAAGGGAGAATTATGTTTCACCTAATAAAAGAAGCTTGAAGTCCACTGGTGATGCTAATGAAGATGAAGTTGCACATGTAGCTTTGGCATTATCCAGGGCTGGACAAAGAGTAGGCTCTCCCCTTATTTCTCAAACACCACATAGGAGAGCAGAGCAGAAGTCCTCTCCTGGTCAGAGCTTGGAAAGAATGCACCAAATGTCAGGGACGGCTCGTGCCAAGTTTCGCGATGTTGTTGATGAAGAGTTTTTGGAAGGTAGTCTAGAAAGCAGGGGAGCTGAAAATGGAGAATATGTTAGAGATACTAGTTCGTTGATGGACATGGAAGGAATGAGCAACACTAGAGTTCTTCTGAAGGGAGGAAAATTTTacagaaagaaagagagagtgGAAAATGTTGGAAATTCCCAACTTGATGATGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTTAGTTTTAGTTCTTTGAAGGAAAAGAATATGGAGGTTACTAATGAAAAGCTCGAGCAATTCTCTCCTAGTCAGCGTAAAAGAAGCAAAAAACTCTTCTGTGGAGATGAAATCCACGCCTTGAATGCTTTGGAAACCTTAGCCGATCTATCTCTAATGATGCCGTCATCTAAAGGAGAATCTGAATCATCTATCCGGTTGAAGGGAGACAGAATGAATGTTGATAAAGATGATAAGTCTGCTTTACCTGAAGCAACATCAAGTCATAATAAGAGAAATAAAGTTAAACTTCGCACAGTCCCTGGAGCTGACACTTCAACGTCCAAAAAATCTAAACTCGGAAAGGATATATCAAATGATACCAATGCTCTCTCTGAATCAAAAGACCAGATTCCATGTGCTGATAAAACATCAAAAAGAAAGCAGAAGTCCATGAAAGCTGTAGATGATGAGAACAAACCCGTGATTAAAGGAAAACACACTGATCAGGTTTTTGCATCACCGAAACAATCGAAGATGGTCAAACCACCAGAGGTGTTCCTACGTGTTGATCAGAAGGGTTTAGCATTTTCATCAACTGCTGAAATTCCACTTTTGAGTGAAGTTAGTTCGCCAACTAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCACGCCTAAAGAGAAGTCTTCTGAGAATATATTGAAAAGTCAACCTAACAAGTACTCTACCCAAAAGGAAAAGCTTTCTAGTTGCTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAACCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCTCTTGGCAAACCACGGAGGTTCTCTGAACACTTTTTACATGAGGAAAGACAAAAACTGGAACAGTATCGAGACTCAGTGAGGAAACATTATTCTGAGCTGCGTGGTGGTTTAAGAGATGGACTTCCGACAGATTTGGCGAGACCATTATATGTTGGACAACGAGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGTGTGCTTACAGTCGACCATGACAAGTGTAGGATTCAGTTCGACCGTCCTGAGTTAGGAGTTGAATTCATCATGGACATTGATTGCATGCCTTCAAATCCATTCGATAATATGCCAGAAGCTTTAAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTCTATGACTACCGAACCACAGATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCACTCATCACCTGTGAAGGGGGATGCCAACCATGTCACTTCCCAGGCCAATATTGATAACCTCTCTACACTAGCTGCTTGTGCTCAACCGTGTAAAGTGAGGCAACATCAAGCTAAAGAAGCTGATATACATGCACTTTCTGAACTAAAGCGTGCTCTTGATAAAAAGGAGACACTGTTAACAGAGCTCCGTAGTGCAAATAGTGGCATATTGGAAAACCAAAATGGCATAGAATGTTTTAAAGATTCCGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAGCGTAATACCTACACAGACAACTCTCTGCCAGCATGGATGAAGCCCAGAGCAAACTTCGAAGTTCATGATGACCTTCCTAGTGCGTTGGATAGTTCTATGTCACAAGAGTCTAGGTCAACTGTCATTGAAATCATTAAAGGATCCAGGCTACGAGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTGTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGGCAGGCATTGGATTCTATTGATTATCAGCACTTGTCCTCCAAGTACAGGTTGCCTGTGATAAGGCCGCAAGATCAAGTGAATGGCAGTTTTTATCATAATAATCAGTTGACTTCCAGAGCATCACAGCCTTTACTTAATGATGCATCTGGTCCAAAACTGCATAAAGATTCTGAACAAGTTGATATTGAAATACCTTCGGAGCTCATCGCTTCATGTGTTGCTACATTAACCATGATACAGAGTTGTACTGAACGGCAATACCCTCCAGCAGATGTGGCTCGGATATTAGATTCTGCTGTTACCAGCCTGCAACCTTGCGATTCTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATTAAGACCCAGATTTTAGCTCTCATCCCTACTTAG 3333 0.4164 MAPTRKSRSVNKRFANDVSPEKDGVSSNKNKPKKKKLSDKLGSQWSKEELQRFYEAYRKYGKDWKKVSAAIRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDAPGSRKPVKRKREKVQLSVSKDPVQSQSVTSGDGCLSLLKKRRIDGIQPRAVGKRTPRVPVYHSYKKDERENYVSPNKRSLKSTGDANEDEVAHVALALSRAGQRVGSPLISQTPHRRAEQKSSPGQSLERMHQMSGTARAKFRDVVDEEFLEGSLESRGAENGEYVRDTSSLMDMEGMSNTRVLLKGGKFYRKKERVENVGNSQLDDGGEACSGTEEGLSFSSLKEKNMEVTNEKLEQFSPSQRKRSKKLFCGDEIHALNALETLADLSLMMPSSKGESESSIRLKGDRMNVDKDDKSALPEATSSHNKRNKVKLRTVPGADTSTSKKSKLGKDISNDTNALSESKDQIPCADKTSKRKQKSMKAVDDENKPVIKGKHTDQVFASPKQSKMVKPPEVFLRVDQKGLAFSSTAEIPLLSEVSSPTKQRSRRKMIFQRPSTPKEKSSENILKSQPNKYSTQKEKLSSCLSSYLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRDSVRKHYSELRGGLRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPELGVEFIMDIDCMPSNPFDNMPEALRRQIGARKASSMTTEPQINGNSSFGGCEMHSSPVKGDANHVTSQANIDNLSTLAACAQPCKVRQHQAKEADIHALSELKRALDKKETLLTELRSANSGILENQNGIECFKDSEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTDNSLPAWMKPRANFEVHDDLPSALDSSMSQESRSTVIEIIKGSRLRAHAMLDAAFQAWCQATKEGKDAITKIGQALDSIDYQHLSSKYRLPVIRPQDQVNGSFYHNNQLTSRASQPLLNDASGPKLHKDSEQVDIEIPSELIASCVATLTMIQSCTERQYPPADVARILDSAVTSLQPCDSRNLPIYREIQMCMGRIKTQILALIPT 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03485 1110 Pfam DIRP 605 706 IPR033471 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 563 579 - -
Tsu01g03485 1110 Pfam Myb-like DNA-binding domain 43 80 IPR001005 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 1 42 - -
Tsu01g03485 1110 ProSiteProfiles SANT domain profile. 40 75 IPR017884 -
Tsu01g03485 1110 SMART DIRP_2 606 707 IPR033471 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 227 263 - -
Tsu01g03485 1110 Coils Coil 831 851 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 114 142 - -
Tsu01g03485 1110 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 1 1110 IPR028306 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 172 212 - -
Tsu01g03485 1110 Coils Coil 658 678 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 398 514 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 10 42 - -
Tsu01g03485 1110 PANTHER LIN-9 1 1110 IPR010561 GO:0006351|GO:0017053
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 114 156 - -
Tsu01g03485 1110 Gene3D - 3 97 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 406 434 - -
Tsu01g03485 1110 CDD SANT 45 79 IPR001005 -
Tsu01g03485 1110 SUPERFAMILY Homeodomain-like 40 88 IPR009057 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 544 579 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 230 258 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 185 200 - -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 326 346 - -
Tsu01g03485 1110 SMART sant 41 89 IPR001005 -
Tsu01g03485 1110 MobiDBLite consensus disorder prediction 475 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03485 Tsu-Chr1 42915548 42928085 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g03485 DIRP 5.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03485 - - gmx:100816217 1593.56