Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03464 ATGGGTGAAGTGAATCCGTGTAAAAAACTAGCAGATAGGTATTTGAAGCGCGAAGTTCTCGGAGAAGGTACCTATGGTGTCGTTTTCAAAGCCATTGATACCCAGACAGGACAAATGGTTGCAATTAAAAAGATTCGGAAAAGGATTGATGAGCCGTTAGATGGGGTCAATTTTACAGCTCTTAGAGAAATTAAACTTCTCAAAGAGCTCAAACATTCAAACATTGTTgatttgattgatgtattccaATATAAGCAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAGACCGAAATATTTTCCTTTCTCCAGCTGATATTAAATCTTACTTTCTAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGATCACGAGTTCGTTGATCAGGCATTTGCTCGGTGGTACAGAGCGCCTGAGCTATTATTTGGTGCCAAGAAGTACGGTTCAGGGGTAGATGTTTGGGCTGCAGCTTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTGGAGGGTTCAACCGATACGCATCAAACACGGAGGATTTTTACAGCATTTGGAACCCCATCACCTTCTCAATGGCCTGATATGATGTACCTTAAATATTAtgttcaagaaaaatatattcctGCTCCCCCGTTGCGTTCTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCAGTGCAAAAGGCATTAGAACACAGGGGCATGGACAAGAACTATCGATGGTCTTTGAAGAAAGATGAAGGTGTTACGAACTTGAATAGAGCAAATTTGGAACAAGAAAACTATGGCAATTGTCAGCGTAAGCTATTGTCAAAGCCTAACTTTCATGCACGTAAGTCAATAGTTGTGCTGCAAATAGCACTAAGGAAGCACTTGGAAAACACCACACCTGGGGTTCATGAGCTGGAAGTGGTCCTGATTGAAAAAGGAAGGGCCGATGAGACAAATTACACTGACAGTGTGGAGACAAGAATGGATCCTCAAGGTCATGGCCAAAACCCATCTATGGGAGTTGTTGGCGGTGGACAAATGACCACATATGGTTCTAATCCGTACCAGCCCAACCATTTAACTGGGTCACCTGGGATGGTTGTTCCCAATGTGGGGAATATTCAACCTGGTGGTCAACCAGATGGATCTCAGCTCGGACAACACCAACTAGCTTATCAGCATATtcatcagcaacaacaacaacagcagcagcagcagctcCAGGCCTTTTGGGGAAATCAGTATCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAAAAGATTATGAAGGCTGATGAGGATGTGAAGATGATATCAGCTGAGGCGCCGGTTGTGTTTGCTAGGGCGTGCGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAAAGGCGAACACTTCAAAAGAATGATATTGCAGCTGCCATCACAGGAACTGATATCTTTGATTTCTTGGTCGACATTGTTCCTCGGGAGGACTTGAAAGATGAAGTGCTTGCATCAATACCAAGAGGACCAATGCCTGTTGGAGGACCTGCTGATGGAATTCCTTATTGCTATATGCCGCCTCAAAATGCACAGCAAGCTGGAAATCCCGGTCTCATGATGCATAATCCAAACATGTATGCTCCGCAGTCTCATCCATACATGGCACCTCAAATGTGGCCCCAACCGTCAGAGCAACAACCATCGCCTTCAGATCAGTAG 1926 0.4102 MGEVNPCKKLADRYLKREVLGEGTYGVVFKAIDTQTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHSNIVDLIDVFQYKQNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYFLMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPDHEFVDQAFARWYRAPELLFGAKKYGSGVDVWAAACVFAELLLRRPFLEGSTDTHQTRRIFTAFGTPSPSQWPDMMYLKYYVQEKYIPAPPLRSLFPMASDDALDLLSKMFTYDPNARISVQKALEHRGMDKNYRWSLKKDEGVTNLNRANLEQENYGNCQRKLLSKPNFHARKSIVVLQIALRKHLENTTPGVHELEVVLIEKGRADETNYTDSVETRMDPQGHGQNPSMGVVGGGQMTTYGSNPYQPNHLTGSPGMVVPNVGNIQPGGQPDGSQLGQHQLAYQHIHQQQQQQQQQQLQAFWGNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVKMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITGTDIFDFLVDIVPREDLKDEVLASIPRGPMPVGGPADGIPYCYMPPQNAQQAGNPGLMMHNPNMYAPQSHPYMAPQMWPQPSEQQPSPSDQ 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03464 641 Gene3D Phosphorylase Kinase; domain 1 5 96 - -
Tsu01g03464 641 Gene3D Transferase(Phosphotransferase) domain 1 97 304 - -
Tsu01g03464 641 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 295 - -
Tsu01g03464 641 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Tsu01g03464 641 PANTHER CELL DIVISION PROTEIN KINASE 9 295 - -
Tsu01g03464 641 MobiDBLite consensus disorder prediction 618 641 - -
Tsu01g03464 641 Gene3D Histone, subunit A 448 564 IPR009072 GO:0046982
Tsu01g03464 641 SUPERFAMILY Protein kinase-like (PK-like) 9 297 IPR011009 -
Tsu01g03464 641 SUPERFAMILY Histone-fold 455 558 IPR009072 GO:0046982
Tsu01g03464 641 ProSiteProfiles Protein kinase domain profile. 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03464 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tsu01g03464 641 CDD STKc_CDK7 13 294 IPR037770 GO:0005675|GO:0008353|GO:0070985
Tsu01g03464 641 Pfam Core histone H2A/H2B/H3/H4 452 549 IPR007125 GO:0003677
Tsu01g03464 641 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03464 641 SMART serkin_6 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03464 Tsu-Chr1 42774616 42784542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03464 8 294 Core Cell Cycle Gene Families AT1G18040 73.519 4.67e-153 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Tsu01g03464 Pkinase 1.5e-69 CL0016
TF NF-YC Tsu01g03464 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03464 K02202 - jre:109003593 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04497 07 49911463 49913965 Tsu01g03464 01 42774616 42784542 PCT