Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03462 ATGGGTGAAGCGAATGATTGCAAGAAATTAGCAGACAGGTATTTGAAGCGCGAAGTTCTCGGAGAAGGTACTTATGGTGTCGTTTTCAAAGCCATTGATACCAAGACAGGACAAATGGTTGCAATTAAAAAGATTCGGAAAAGGATTGATGAGCCGTTAGACGGGGTCAATTTTACAGCTCTTAGAGAAATTAAACTTCTCAAAGAGCTCAAACATCCAAACATTGTTgatttgattgatgtattccaATATAAGCAGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGATCTTGAAGCTGTCATAAGAAACCGAAATATTTTCCTTTCTCCGGCTGATATTAAATCTTACCTTCTAATGATACTAAAAGGTCTTGCTTATTGTCACAAAAAATGGGTTTTGCATAGGGATGTGAAACCAAACAACTTGTTGATAGGACAAAATGGACAGCTGAAACTTGCAGATTTTGGTTTATCACAGATATTTGGAGACCCAGATCACGAGTTTGTTGATCAGGCATTTGCTCGGTGGTACAGAGCACCTGAGCTATTATTTGGTGCCAAGAAGTACGGTTCAGGGGTAGATGTTTGGGCTGCAGCCTGTGTATTTGCTGAACTTCTTCTTCGTAGACCCTTTTTGGAGGGTTCAACCGATACGCATCAAACACGGATGATTTTCACAGCATTTGGAACCCCATCACCTTCTCAGTGGCCTGATATGATGTACCTTAAATATTAtgttcaagaaaaatatattgctGCGCCCCCGTTGCGCACTTTATTTCCAATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGAATTTCAGTGCAGAAGGCATTAGAACACAGGTTGGTGTTCCAACTTGAACAAAAGTTAAGTTCTGTTGGGTTATCGCTTACAATTGGGAAAGCTCTATCTGGAACTGAAAATGTTGGTGATGTCGCAACTTCGATCCAAATTGGAAGTCGTCCACTGGAGAAGATGAGGAATGGTAGTAATAAATAG 1038 0.3863 MGEANDCKKLADRYLKREVLGEGTYGVVFKAIDTKTGQMVAIKKIRKRIDEPLDGVNFTALREIKLLKELKHPNIVDLIDVFQYKQNLHLVFEFMETDLEAVIRNRNIFLSPADIKSYLLMILKGLAYCHKKWVLHRDVKPNNLLIGQNGQLKLADFGLSQIFGDPDHEFVDQAFARWYRAPELLFGAKKYGSGVDVWAAACVFAELLLRRPFLEGSTDTHQTRMIFTAFGTPSPSQWPDMMYLKYYVQEKYIAAPPLRTLFPMASDDALDLLSKMFTYDPNARISVQKALEHRLVFQLEQKLSSVGLSLTIGKALSGTENVGDVATSIQIGSRPLEKMRNGSNK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03462 345 PANTHER CELL DIVISION PROTEIN KINASE 9 295 - -
Tsu01g03462 345 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03462 345 Gene3D Phosphorylase Kinase; domain 1 4 96 - -
Tsu01g03462 345 SMART serkin_6 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03462 345 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Tsu01g03462 345 ProSiteProfiles Protein kinase domain profile. 14 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03462 345 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 295 - -
Tsu01g03462 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tsu01g03462 345 SUPERFAMILY Protein kinase-like (PK-like) 10 297 IPR011009 -
Tsu01g03462 345 CDD STKc_CDK7 13 294 IPR037770 GO:0005675|GO:0008353|GO:0070985
Tsu01g03462 345 Gene3D Transferase(Phosphotransferase) domain 1 97 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03462 Tsu-Chr1 42757776 42761945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03462 8 339 Core Cell Cycle Gene Families AT1G18040 65.361 1.36e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Tsu01g03462 Pkinase 8.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03462 K02202 - jre:109003593 472.626