Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03460 ATGGAAATTAATACAACTACCACTGTACCTGCAGGGCCACTAACTGCTTCTACAAAGAACCATACTTTCATACACCATTACCATCACTTACATTCAGAGAATCATAACCATAACCATATTGACCATTTTCCTTTCAAAACCGTTGTCATAATCATCACAGTGATTACCTTAATTATGCTCctatttaccatttttttggTTGTATGCTTGATCCGTCGCCAAAAATCTTCTGGCAAAAATGGGATTTACAAAGATGATTGTGAGAGTAGAGTGCTTCATGATACAAGCAGGAGGGACATCGCTTCAACAATCATGTCCTTTGATTCTAGCCCAGATGTTAAAGGGGGGTGTCTTTATGGAGGAAATTTGAGCAGGACACCAACAACACCTAAATTTAGAGGAGTGCAAGTTTTCACTTACAGGGAGCTAGAAGTTGCTACGAATGGATTCAATGAAGCAAATGTGATTAGTAATGGAGGAGTTAATGGTTTGATGTATAAGGGAGTCTTAAATGATGGAACTTTAGCAGCAATTAAGTTGCTTCAGAGTGAGGGTAAGCAAGGAGAGCGTGCCTTCAGAATAGAGGTTGATCTCCTAAGCCAATTGCGCTCTCCATATTTGGTGGAATTACTTGGCTATTGTGCTGACCAACACCACAGGttattgatttttgaatacatGCCTAATGGTACACTCCAACATCACCTACATTCCCCTAAGGATCAAACACAACCATTGGATTGGTGGGCCCGGATGAGGATAGCCCTTGATTGTGCCAGGGCCTTGGAGTTCCTGCATGAACATGCTGTTTCACCCGTGATCCACAGAGACTTCAAGAGTTACAATGTTCTACTGGATCAGAATTTCCGTGCAAAGGTGTCAGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAAAATGGCCAAGTTTCTACCCGTGTGCTTGGGACCACTGGATATTTGGCACCAGAGTACGCCTCCACGGGTAAGCTTACTACAAAGTCAGATGTTTACAGCTACGGTGTAGTTCTTCTCGAATTGCTAACAGGACGTGTACCAGTTGACATTAAGCGGCCCACAGGAGAACATGTCCTTGTGTCTTGGGCTCTTCCAAGGTTGACAAACAGAGAAAAAGTTGTGGAAATGGTTGACCCAGTTCTACATGGGCAGTACTCAAAGAAAGCTTTAGTTCAGGTCAAACTTGATTCCCTTTAG 1215 0.4181 MEINTTTTVPAGPLTASTKNHTFIHHYHHLHSENHNHNHIDHFPFKTVVIIITVITLIMLLFTIFLVVCLIRRQKSSGKNGIYKDDCESRVLHDTSRRDIASTIMSFDSSPDVKGGCLYGGNLSRTPTTPKFRGVQVFTYRELEVATNGFNEANVISNGGVNGLMYKGVLNDGTLAAIKLLQSEGKQGERAFRIEVDLLSQLRSPYLVELLGYCADQHHRLLIFEYMPNGTLQHHLHSPKDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKSYNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYASTGKLTTKSDVYSYGVVLLELLTGRVPVDIKRPTGEHVLVSWALPRLTNREKVVEMVDPVLHGQYSKKALVQVKLDSL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03460 404 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 1 399 - -
Tsu01g03460 404 ProSiteProfiles Protein kinase domain profile. 150 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03460 404 PANTHER OS01G0750732 PROTEIN 1 399 - -
Tsu01g03460 404 Gene3D Phosphorylase Kinase; domain 1 123 226 - -
Tsu01g03460 404 Gene3D Transferase(Phosphotransferase) domain 1 227 401 - -
Tsu01g03460 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Tsu01g03460 404 SUPERFAMILY Protein kinase-like (PK-like) 127 394 IPR011009 -
Tsu01g03460 404 Pfam Protein kinase domain 160 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03460 Tsu-Chr1 42714058 42717576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03460 48 399 Receptor kinase-like Gene Family AT3G58690 54.085 4.03e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Tsu01g03460 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03460 - - mtr:MTR_1g082580 719.153