Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03456 ATggaaataaattatcaaaatgacaaaACTACCCCTCTCTGTTTTCTCTGCATCTTCATTCTTTTCTCCGCCGGCGTTCCCTTCGCCGGAGCACAGTCCAGTAACGATAATACAAACAACGACTATTACGGCCGTGTAAGTCCTTCCATGGCAATCATAATAGTTATTCTCATCGCTGCTCTTTTTCTGATGGGATTCTTCTCACTCTACATTCGTCGATGTGCTGATTCACCTTCCAACAGTATCAGAAACATGGCAGGTATTGCTGGACGGTCACGACGCGCGGCGCGTGGTCTTGACGCGTCGATACTTGAGACGTTTCCGATATTTGAATATTCTGTGGTGAAGATTCATAAAATTGGAAAAGGTGCTTTGGAATGTGCTGTTTGTTTGAATGAGTTTGAAGAAACTGAAACGCTGCGTTTGATTCCGAAATGTGATCACGTGTTTCATCCTGAGTGTATTGATGAGTGGCTTGGTTCTCATACTACTTGCCCGGTTTGTAGAGCTAATTTGGTTCCTCAACCGGGTGACTCGGTTCACGGGGTTCCGGTTTTTAATACTGAACCGGAAGACATCGAGGCGCAAAATGAGACCGTTGAATCAATTCCGGAGCATCAAAATGAAGGTTCGATTAAAGAGTCAACTGAACCACAGCCACAACCACAAGTGTTGAGTTTAAGCAACACGTTGAACCGGAACCGGACGAGAGGTTCACAGTCTGGTCGGCCTCGTTGGTTTTCGCGGTCTCACTCGACTGGTCATTCAGTGGTTCAACCGGGTGAGAATACTGAACGATTTACTTTGAGGTTACCGGTGGAAGTGAGGAAACAAATATTACAAAACCCGGAATTGCATCGGGCTAGAAGTTTGGTTGTGTTGCCAAGAGAAACTAGTTCACGACGGGGTTATAGAACCGGTGGCGGGGAAGGAAGTAGTAGAGGGAAGTCTGTAAGGAGGTTGGACCGAGGTTTACTATCGGACCGATGGGTTTTTACCATGGCACCTCCTTTCCTAGTAAGAGCGTCGTCAATTAGGTCACCGAGAGTAGGAAATAGTGCCGGGGAAGGTACCTCTGGTTCAACAACTACGGTGATGGTTGCTGACTCGCCGCGCCCTCCAGTTTAA 1128 0.4637 MEINYQNDKTTPLCFLCIFILFSAGVPFAGAQSSNDNTNNDYYGRVSPSMAIIIVILIAALFLMGFFSLYIRRCADSPSNSIRNMAGIAGRSRRAARGLDASILETFPIFEYSVVKIHKIGKGALECAVCLNEFEETETLRLIPKCDHVFHPECIDEWLGSHTTCPVCRANLVPQPGDSVHGVPVFNTEPEDIEAQNETVESIPEHQNEGSIKESTEPQPQPQVLSLSNTLNRNRTRGSQSGRPRWFSRSHSTGHSVVQPGENTERFTLRLPVEVRKQILQNPELHRARSLVVLPRETSSRRGYRTGGGEGSSRGKSVRRLDRGLLSDRWVFTMAPPFLVRASSIRSPRVGNSAGEGTSGSTTTVMVADSPRPPV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03456 375 MobiDBLite consensus disorder prediction 348 368 - -
Tsu01g03456 375 MobiDBLite consensus disorder prediction 298 317 - -
Tsu01g03456 375 MobiDBLite consensus disorder prediction 199 263 - -
Tsu01g03456 375 SUPERFAMILY RING/U-box 122 177 - -
Tsu01g03456 375 MobiDBLite consensus disorder prediction 213 263 - -
Tsu01g03456 375 CDD RING-H2_EL5_like 126 169 - -
Tsu01g03456 375 MobiDBLite consensus disorder prediction 348 375 - -
Tsu01g03456 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 18 318 - -
Tsu01g03456 375 PANTHER RING FINGER DOMAIN-CONTAINING 18 318 - -
Tsu01g03456 375 Pfam Ring finger domain 126 169 IPR001841 -
Tsu01g03456 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 174 IPR013083 -
Tsu01g03456 375 SMART ring_2 127 168 IPR001841 -
Tsu01g03456 375 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03456 Tsu-Chr1 42683651 42685478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03456 18 363 Rapid Response to Elicitors AT3G05200 46.736 6.48e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03456 K10664 - gmx:100810865 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04502 07 49939956 49941597 Tsu01g03456 01 42683651 42685478 PCT