Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03455 ATGTGTTTACCTGAAGAGGAAAGAGATAGAGTGAAAGATATGGCACTAGAAGCAGTGGTTTATCCACAAACACAAGACCCTTTTGGTTTTGGAATCAACAAAGATTTTTACAACTTTAACTTCAACAACCTTGTTGCAAAAGAACAAGAACATCAACATGAACATGAACAAGAACAAAATTCTTTCTGTTTTGTAGAAAACCAAACAGAGAACAACAATTATCCTTATTATGGAGATTGGAATAACAATACTTTTTCACCACCCCATTTCAATGAACTTCAAGAAACTACTACTGATCCAAGTAGTAACAATACTCAAAATTTCGATACCTCGCCTTCCATTAACACGTTTGTTCGTCCGAAAAGGCGCAGAGCAAGAAGccgaaaaaacaaagaagaaattgAGAGTCAGAGAATGACTCACATTACTGTTGAGCGTAATAGGAGAAAGCAGATGAATGAGTATCTTGCTGTTCTTCGTTCTCTCATGCCAGAATCTTACATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAAGAGCTTGAACACAAGTTTCATTTGCTTGGTgctaagaaagaagaagagGTGAAATCTAATGATGTTGGTGGATCAACCAAACCATTTTCTGAGTTCTTTACATTTCCACAGTATTCAACAAGTAGTAGTGGTTCTAATTCTGCAACAACTTTTGGTGAAAAGGTTGGTGAGATTCAGTCGTGCATTGCTGATATAGAAGTGACAATGGTTGAAAGCCATGCAAATATCAAAATAAGATCAAAAAAGAGGCCAAAGCAGCTCTTGAAAATTGTATCTAGTTTGCATAACATGCATCTCACAATCTTGCATCTTAATGTTACCACAACTGGTGAAATTGTTCTCTACTCTCTCAGTGTTAAGgttgAAGATGATTGCAAGTTAGGATCAGTGGATGATATAGCTGCAGCTGTATATCAAATGGTTAATAGCATTCAACAAGAACAATGTTGA 1005 0.3473 MCLPEEERDRVKDMALEAVVYPQTQDPFGFGINKDFYNFNFNNLVAKEQEHQHEHEQEQNSFCFVENQTENNNYPYYGDWNNNTFSPPHFNELQETTTDPSSNNTQNFDTSPSINTFVRPKRRRARSRKNKEEIESQRMTHITVERNRRKQMNEYLAVLRSLMPESYIQRGDQASIIGGAINFVKELEHKFHLLGAKKEEEVKSNDVGGSTKPFSEFFTFPQYSTSSSGSNSATTFGEKVGEIQSCIADIEVTMVESHANIKIRSKKRPKQLLKIVSSLHNMHLTILHLNVTTTGEIVLYSLSVKVEDDCKLGSVDDIAAAVYQMVNSIQQEQC 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03455 334 MobiDBLite consensus disorder prediction 85 135 - -
Tsu01g03455 334 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 14 333 - -
Tsu01g03455 334 Gene3D - 126 208 IPR036638 GO:0046983
Tsu01g03455 334 PANTHER MAX DIMERIZATION, MAD 14 333 - -
Tsu01g03455 334 SMART finulus 142 193 IPR011598 GO:0046983
Tsu01g03455 334 MobiDBLite consensus disorder prediction 85 117 - -
Tsu01g03455 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 200 IPR036638 GO:0046983
Tsu01g03455 334 Pfam Helix-loop-helix DNA-binding domain 137 188 IPR011598 GO:0046983
Tsu01g03455 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03455 Tsu-Chr1 42644433 42646305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03455 14 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.497 2.72e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g03455 HLH 3.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03455 - - pvu:PHAVU_007G181900g 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04503 07 49959774 49961377 Tsu01g03455 01 42644433 42646305 PCT