Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03451 ATGTTACCCTCACCACTTGATTCTTCAACTTCATATCTGAGCACAACCACCGTAGTTGCGCTTTGTGTATTCTTCGCACTCCTCTGCGCTTGCATCATCGTTGGCCACCTTCTTGAAGAGAATCGATGGGCCAATGAATCCATCACTTCTCTCCTTCTTGGTTTGTGTTCTGGAGTGGTGGTGTTGCTGGTGACCAAATTCCATAGTACCGAGATTCTAATATTCAACGAAGACTTATTCTTTCTTTACTTGCTTCCACCAATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAGGAATTTCACTACTATACTTCTTTTTGGAGTCCTTGGAACAGTTATTTCTTTCTGTCTTATATCTCTTGGTGCCTTTCTGCTCTTTAGTGCGATTGGAATAACTAACCTCGACATAAAAGATCATCTAGCCATTGGTGCCATATTATCAGCAACTGACTCAGTTTGTACATTACAGGTTCTGAGTCAAGATGAAACGCCTTTTCTTTACAGCATTGTATTTGGCGAAGGAGTAGTAAATGACGCTACGTCTATTGTTCTTTTCAATTCAGTTCAATCACTTGACTTCAGCAGCATCAATGCTATTACAGTTTTGAAATTGTTGGGGACTTTCCTTTACCTCTTCTGCACTAGTACTGCCCTTGGCATAGGAGTTGGCCTTTTAAGTGCTTATATTATTAAAACACTTTACTTTGGAAGGCACTCTACCGATCGTGAAGTTGCACTTATGATGTTAATGGCATATTTGTCATATATGATCGCTGAGCTTTTAAATCTCAGTGGAATTTTGACAATTTTCTTCTGTGGCATTGTTATGTCACACTACACATGGCACAACGTTACCGAAAGCTCAAGGACAACAACAAAGCACTCCTTTGCAACTATATCATTCATAGCTGAAACCTTTATATTTCTATATGTTGGCATGGATGCTTTTGACATTGACAAATGGAAAAGAAGCAAAGCCAGCATAGGAACTTCAGTTGCTGTCAGCTCAACTTTGATTGCATTAGTTTTGATTGGAAGAGCAGCTTTTGTTTTCCCTATAGCAAACCTTGCAAATTGCACCAAAACAAGAGATAGCACCAAAATTGAGTTTCGATCGCAGTTTATAATTTGGTGGGCAGGCCTAATGAGAGGTGCAGTAACCATTGCCTTATCTTATAACCAGTTTTCAAAATCTGAGATAGCATCAGCTGAAGACTCTTTGATGATCACTTCAACTATAATCCTTGTATTATTCAGTACTGTGGTATTTGGTTCCATAACAAAGCCTTTGATTAAGGCTGTGAAgttaaggaattcaaaaccaTCCATTTCTGATTCCACTGATATTCATGAGGATCTGAGATTACTATTTCTTGAAAACAATTGTTCCATCAACCAAAGCAATAATCAGACATATCACAGACAAAGTAGCCTGAGTTTGCTGATGCGTTATCCTACTACTACGGTTCATTATTTCTGGAGGAAATTCGATGATAAATTTATGAGACGTATATTTGGTGGTAGAGGTTTTGTTCCAGTTGTTCCTGGTTCACTGCCCGCTGAAGAGGATATTTCTTGA 1593 0.3842 MLPSPLDSSTSYLSTTTVVALCVFFALLCACIIVGHLLEENRWANESITSLLLGLCSGVVVLLVTKFHSTEILIFNEDLFFLYLLPPIIFNAGFQVKKKQFFRNFTTILLFGVLGTVISFCLISLGAFLLFSAIGITNLDIKDHLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLDFSSINAITVLKLLGTFLYLFCTSTALGIGVGLLSAYIIKTLYFGRHSTDREVALMMLMAYLSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTESSRTTTKHSFATISFIAETFIFLYVGMDAFDIDKWKRSKASIGTSVAVSSTLIALVLIGRAAFVFPIANLANCTKTRDSTKIEFRSQFIIWWAGLMRGAVTIALSYNQFSKSEIASAEDSLMITSTIILVLFSTVVFGSITKPLIKAVKLRNSKPSISDSTDIHEDLRLLFLENNCSINQSNNQTYHRQSSLSLLMRYPTTTVHYFWRKFDDKFMRRIFGGRGFVPVVPGSLPAEEDIS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03451 530 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 19 472 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03451 530 Gene3D - 140 192 - -
Tsu01g03451 530 PANTHER SODIUM/HYDROGEN EXCHANGER 8 528 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tsu01g03451 530 Pfam Sodium/hydrogen exchanger family 23 437 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu01g03451 530 PANTHER SODIUM/HYDROGEN EXCHANGER 8 528 - -
Tsu01g03451 530 PRINTS Na+/H+ exchanger signature 108 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03451 530 PRINTS Na+/H+ exchanger signature 79 90 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03451 530 PRINTS Na+/H+ exchanger signature 93 107 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03451 530 PRINTS Na+/H+ exchanger signature 148 158 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03451 Tsu-Chr1 42499513 42503220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03451 17 527 Antiporters AT3G05030 62.115 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03451 K14724 - qsu:112009828 779.63