Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03437 atgattttcatttttgaaatagacTTGAGAAATATGGACcttgagaaagagagagatgacGAAGCGTCTCCGAGAGGAGTCTTAGAGGCATGTGTTAGAGGCTTTGATGCTCCGCAATCACCAGAACCGGAAACCAGTTGTTCGAATTCGAGGGCACGGTCACATTGGGGCAGATTTTTCAAACTGTGGAAGAGAAAATCAGTTAAACGCCTAGCTTCTACTATACCTCCTATTGGTGTGCCACTGCCAAGGATGCCAAAGTGGAAAAGCAAAAGCACTAGGGAAAATTGTGTTATAAGTAGTAATCTACAAAATTTTAGGTCTTCTTTGGTAACTTTCACCCTCTCTGACCTGAGAAATGCAACTGATAATTTCAACCAAGAAAATCTTATTGGAAGAGGTGGTTTTTCTGAGGTTTACAAGGGTTCTCTCCATAATGGACAACTAGTAGCTGTGAAGAAAATGACTACAGGGAGCACAGATGAGAAAACAACTGGATTTCTATCTGAGTTAGGCATTATTGCTCATGTTGATCATCCTAATACTGCAAAGCTTGTTGGATGTTGTGTAGAGGGAGAAATGCACCTTGTCTTTGAATTATCTACACTGGGAAGTTTAGGATCTGTTCTTCATGGTTCAGATAAAACGAAGTTAGATTGGAGTAAAAGGTATAAAGTTGCTCTTGGAATAGCTGACGGTCTTCTCTATTTGCATGAGAATTGTGAAAGGCGAATAATTCATAGAGATATAAAGATAGAGAATATTCTTCTCACAGAGAATTTTGATCCACAGATTTGTGATTTTGGGCTTGCAAAGTGGTTACCGGAACATCTGAGTCACCATAATGTGTCCACATTTGAAGGCACATTTGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTGGATGAGAAAACTGATGTTTATTCTTTCGGTGTTTTACTTTTGGAGATCATAACCGGGCGCAGGGCTTTGGATGATAACCAGAAGAGTATTGTGACATGGGCAAAACCTTTGCTTGATTCTAATAGTATCAAGGACGTTGTTGATCCATCTCTTGGATATAACTATGACAAAGGACAAATTGGATGTCTTGGTTTGACAGCAGCAATGTGTGTTGAGCAGTCTCCTATCTTACGCCCTCGCATGAATCAGGTTGTAACATTACTAAGAGGGCAAGATGCTGTCCTAGCTGCAAAAGCATGCAGCAGGAGGCCTCTCCAAAGAACATATTCAGAAGAGTTACTTGACGCGCAAGAATACAACTCCACAAAATATTTAAGAGAACTCAATCAACATAAACAAACATTGGGTCTTGACTGCATGTAA 1332 0.3896 MIFIFEIDLRNMDLEKERDDEASPRGVLEACVRGFDAPQSPEPETSCSNSRARSHWGRFFKLWKRKSVKRLASTIPPIGVPLPRMPKWKSKSTRENCVISSNLQNFRSSLVTFTLSDLRNATDNFNQENLIGRGGFSEVYKGSLHNGQLVAVKKMTTGSTDEKTTGFLSELGIIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSVLHGSDKTKLDWSKRYKVALGIADGLLYLHENCERRIIHRDIKIENILLTENFDPQICDFGLAKWLPEHLSHHNVSTFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGRRALDDNQKSIVTWAKPLLDSNSIKDVVDPSLGYNYDKGQIGCLGLTAAMCVEQSPILRPRMNQVVTLLRGQDAVLAAKACSRRPLQRTYSEELLDAQEYNSTKYLRELNQHKQTLGLDCM 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03437 443 SUPERFAMILY Protein kinase-like (PK-like) 105 391 IPR011009 -
Tsu01g03437 443 SMART serkin_6 125 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03437 443 Gene3D Phosphorylase Kinase; domain 1 87 199 - -
Tsu01g03437 443 PANTHER OS08G0249100 PROTEIN 8 436 - -
Tsu01g03437 443 Gene3D Transferase(Phosphotransferase) domain 1 202 420 - -
Tsu01g03437 443 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 8 436 - -
Tsu01g03437 443 ProSiteProfiles Protein kinase domain profile. 125 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03437 443 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Tsu01g03437 443 Pfam Protein tyrosine and serine/threonine kinase 127 331 IPR001245 GO:0004672|GO:0006468
Tsu01g03437 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03437 Tsu-Chr1 42396230 42398770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03437 88 436 Receptor kinase-like Gene Family AT1G53420 38.764 1.85e-75 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu01g03437 PK_Tyr_Ser-Thr 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03437 - - cam:101512181 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03437 01 42396230 42398770 Tsu07g04516 07 50066646 50070017 ECH
Tsu01g03861 01 46400681 46403464 Tsu01g03437 01 42396230 42398770 ECH
Tsu08g03679 08 54843566 54870363 Tsu01g03437 01 42396230 42398770 ECH
Tsu01g03437 01 42396230 42398770 Tsu01g03437 01 42396230 42398770 ECH
Tsu07g04516 07 50066646 50070017 Tsu01g03437 01 42396230 42398770 PCT