LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g03429	ATGGAGTGCAACAAGGACGAGGCTGTGAGGGCTAAGCAATTGGCAGAAAGTAGAATGCAAAATGGTCAATTTGTAGAGGCACTGAAGTTTGCTAACAAGGCCAAAAAGCTGTATGCTGATGTTGATAACATTGCTCAGATCCTTGCAATTTGTGAGGTTCACATTGCTGCATTGAACAAACTCTCTTCTTCTGAAATGGACTGGTATGGAATTCTTCGGACAGAAAGACTCTCCGAGGAAGCAATCATAAAGAAACAATACAGAAAGCTTGCACTGCTACTTCATcctgataaaaataaatttgctgGTGCAGAAGCTGCTTTCAAGTTGATCGGGGAAGCCAATCGGGTATTGAGTGACCAAGCAAAGCGGTCTTTACATGACATGAAGGTTAAAGCTCATGCGAGAGCTGCAGTATCTAAGACCTCGTCCCATCAGTCAAATGGGAACGTGTTTGCAGCAAATCAAGTTCCAAATGcaacaaaatataagaaaaaaagttcTTCAAACTCCCCTTCTTTGAATCCCCATCTGAATGCACAAAAGACATTCTGGACAATGTGCCAACATTGTAATAGCAGGTTCCAGTACTACGTTAATTATATCAATATGACCTTACTATGTCAAAATTGTAAGACATCCTTTGTAGCTATTGGTATCAGTCAATCGGCTGCCCCATCATCTGTACCATTTGTTTCCCCAGAAGTGCCTCCAATGCCGGCTCCACCAAAACCAGCCTCTAAAAGTAATGGTGGAAAACCCCCTGGTGGTGGATATGCAGAGACGTTTATGCGGTCATACCCTTCATGTATGAAAACATGTGCCACTGGAGTTGGTAAGCAACATAAAGATGAAAAGAGTGAGTATGTCTATGTTCCTGTGTCCAAACCAATGGAGTCACAACCCTCAAAAaatgttggaagcaagagagtgagaCAACCAAAACCAGGTTCCAAACAGAGATTCAACACTCGAAATGATGATGAAAATAAAGATGTCAATGTTCAAGAAAATCATGTTGATCCTTCAAGGTTGAATGTTAGAAGGTCTTCCAGACAAAAGCAACATGTTTCATATGTGGAAACGTATGCGGATGACAATTTTGACGTTCCTTCCAAAAAGCAACGACAAAACGAATCATTTGACAATGATGAAGTTGAGGAAAAGAATGTGTCTGAAGAACCAGTTTTAAGTAATACAAGCGGCGATAAGCATTCTGATGTTCAAGAAGACAAGGTATCGGAGTCAGATATTGATTCTAAAATGTTAAATGAGGAAAACTGCCCTCCACCGAATTCAAATATCTCTTCCAGTCCAGAGATCATTACTTGTCCTGATCCAGATTTCAATAATTTTGAGAAGGACAAGGCAGATGATTGTTTTGCTGCTAATCAATTATGGGCAATTTATGATAACACTGATGCTATGCCAAGGTTTTATGCTCTTATCAAGAAAGTGACATTCCCTTTCAAGTTACATATCACATGGTTAGAAGCTGACCCAGATGAGGATGATGAGGTTGCTTGGTATAATGCAGATTTGCCTATTGCTTGTGGTAAATTCAAACTTGCTAACTCTCAGAGAACCACAGATCGAGGTATGTTCTCTCATCAGATTCAGTTCATAAAAGGAAATGAGAAAAATTCTTACCTAGTGTTTCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGAAATTGGGATGTCAAATGGAGTTATAATCCAGAAAATTATTTGAAGCGTGAATTCGCTTATGTGGAAATCCTCTCAGATTTTACTGAAAATGTTGGCATTGAAGTAGCTTACATGAGCAAAGTGAAAGGGTTTGTTAGCCTCTTTGAGAAAACTAGGAAGAATGGAGAGAATACATTTTGTATTCTACCTAATGAGCTATACAGATTCTCACATCAAATTCCTTCCTGTAAGATGAGTGGTGATGAAAGGGAAGGTGTTCCAAGAGGTTGTTTTGAACTTGATCCTGCTGCCCTGCTAACTGAGATATTTGAAGCTGAGAAAGATTCAAGGGAAAAGGTATGA	2034	0.385	MECNKDEAVRAKQLAESRMQNGQFVEALKFANKAKKLYADVDNIAQILAICEVHIAALNKLSSSEMDWYGILRTERLSEEAIIKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANRVLSDQAKRSLHDMKVKAHARAAVSKTSSHQSNGNVFAANQVPNATKYKKKSSSNSPSLNPHLNAQKTFWTMCQHCNSRFQYYVNYINMTLLCQNCKTSFVAIGISQSAAPSSVPFVSPEVPPMPAPPKPASKSNGGKPPGGGYAETFMRSYPSCMKTCATGVGKQHKDEKSEYVYVPVSKPMESQPSKNVGSKRVRQPKPGSKQRFNTRNDDENKDVNVQENHVDPSRLNVRRSSRQKQHVSYVETYADDNFDVPSKKQRQNESFDNDEVEEKNVSEEPVLSNTSGDKHSDVQEDKVSESDIDSKMLNEENCPPPNSNISSSPEIITCPDPDFNNFEKDKADDCFAANQLWAIYDNTDAMPRFYALIKKVTFPFKLHITWLEADPDEDDEVAWYNADLPIACGKFKLANSQRTTDRGMFSHQIQFIKGNEKNSYLVFPKKGETWAIFRNWDVKWSYNPENYLKREFAYVEILSDFTENVGIEVAYMSKVKGFVSLFEKTRKNGENTFCILPNELYRFSHQIPSCKMSGDEREGVPRGCFELDPAALLTEIFEAEKDSREKV	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	292	440	-	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	404	422	-	-
	Tsu01g03429	677	Pfam	DnaJ domain	67	128	IPR001623	-
	Tsu01g03429	677	Pfam	Domain of unknown function (DUF3444)	439	646	IPR024593	-
	Tsu01g03429	677	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN	1	673	-	-
	Tsu01g03429	677	CDD	DnaJ	67	120	IPR001623	-
	Tsu01g03429	677	Gene3D	DnaJ domain	55	155	IPR036869	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	426	440	-	-
	Tsu01g03429	677	PANTHER	-	1	673	-	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	367	385	-	-
	Tsu01g03429	677	SMART	dnaj_3	66	123	IPR001623	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	321	348	-	-
	Tsu01g03429	677	SUPERFAMILY	Chaperone J-domain	57	131	IPR036869	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	227	260	-	-
	Tsu01g03429	677	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Tsu01g03429	677	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Tsu01g03429	677	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Tsu01g03429	677	MobiDBLite	consensus disorder prediction	231	249	-	-
	Tsu01g03429	677	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g03429	Tsu-Chr1	42338223	42340256	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g03429	4	222	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.444	1.06e-21	95.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g03429	-		-	mtr:MTR_1g060440	933.324