Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03428 ATGGCGTGCAACAAGGACGAAGCTGTGAGGGCTAAGCAATTGGCAGAAAGTAGAATGCAAAGAGGTCAATTTGTAGAGGCGCTGAAGTTTGCTAACAAGGCCAAAAAGCTGTGTGCTGATGTTGATGACATTGCTCAGATCCTTGCAATTTGTGAGGTTCACATTGCTGCATTGAACAAACTCTCTTCTTCTGAAATGGACTGGTATCAAATTCTTCAGACAGAAAGACTCTCCGAGGAAGCAATCGTAAAGAAACAATACAGAAAGCTTGCACTGCTACTTCATcctgataaaaataaatttgctgGGGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAATAGCGTATTGAGTGACCAAGCAAAGCGGTCATTACATGACATGAAGGTTAAAGTCCATGTCAGACATGCAGTACCTAAGACCCCATCCCATCACTCAAATGGGGATATAAATTTGCTGGTGCAGGAAAGTTTAGACAGAATGATGCAGCAGCAGTCTCAAAGAAAGCAATTAGATATGATTAGGGAAATATTGGAGCAGAGAGctaaaaagagaagaaaatgctaa 570 0.3965 MACNKDEAVRAKQLAESRMQRGQFVEALKFANKAKKLCADVDDIAQILAICEVHIAALNKLSSSEMDWYQILQTERLSEEAIVKKQYRKLALLLHPDKNKFAGAEAAFKLIGEANSVLSDQAKRSLHDMKVKVHVRHAVPKTPSHHSNGDINLLVQESLDRMMQQQSQRKQLDMIREILEQRAKKRRKC 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03428 189 Gene3D DnaJ domain 64 188 IPR036869 -
Tsu01g03428 189 SMART dnaj_3 66 123 IPR001623 -
Tsu01g03428 189 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 144 - -
Tsu01g03428 189 PRINTS DnaJ domain signature 69 87 IPR001623 -
Tsu01g03428 189 PRINTS DnaJ domain signature 87 102 IPR001623 -
Tsu01g03428 189 PRINTS DnaJ domain signature 103 123 IPR001623 -
Tsu01g03428 189 PANTHER - 1 144 - -
Tsu01g03428 189 CDD DnaJ 67 120 IPR001623 -
Tsu01g03428 189 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Tsu01g03428 189 SUPERFAMILY Chaperone J-domain 56 132 IPR036869 -
Tsu01g03428 189 Pfam DnaJ domain 67 128 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03428 Tsu-Chr1 42330507 42331076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03428 4 128 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 38.168 3.69e-18 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03428 - - aprc:113873604 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03428 01 42330507 42331076 Tsu01g03428 01 42330507 42331076 ECH
Tsu07g04525 07 50150846 50155330 Tsu01g03428 01 42330507 42331076 PCT