Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03427 ATGGAGTGCAACAAGGAAGAGGCTGTGAGGGCTAAGCAATTGGCGGAAATTAGAATGCAAAGGGGTCAATTTGTAGAGGCGCTGATGTTTGCTAACAAGGCCAAAAAGATGTATGCTGATGTTGATAACATTGCTCAGATCCTTACAGAACGACTCTCCGAGGAAGCAATCATAAAGAAACAGTACAGAAAGCTTGCACTGCTACTTCATcctgataaaaataaatttagtggTGCAGAAGCTGCTTTCAAGTTGATCGGGGAAGCCAATAGCGTGTTGAGTGACCAAGCAAAGCGGTCTTTACATGACATGAAGGTTAAAGCCCATGCGAGAGCTGCAGTACCTAAGACCCCATACCAAGCGAAGCGAGACCTGCAGTACCTAAGACCCCATCCGAAGCGAGAGCTTCAGTACCTAACACCCCATCCGAAGCGAGACCTGCAGTACCTAAGACCCCATCCGAAGCGAGAGCTTCAGTACCTAAGACCCCATCCCATGCGAGAGCTTCAGTACCTAACACCCCATCCCATCACTCAAATGGGAACATGTTTGCAGCAAATCAAGTTCCAAATgtaa 576 0.4583 MECNKEEAVRAKQLAEIRMQRGQFVEALMFANKAKKMYADVDNIAQILTERLSEEAIIKKQYRKLALLLHPDKNKFSGAEAAFKLIGEANSVLSDQAKRSLHDMKVKAHARAAVPKTPYQAKRDLQYLRPHPKRELQYLTPHPKRDLQYLRPHPKRELQYLRPHPMRELQYLTPHPITQMGTCLQQIKFQM 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03427 191 PRINTS DnaJ domain signature 62 77 IPR001623 -
Tsu01g03427 191 PRINTS DnaJ domain signature 78 98 IPR001623 -
Tsu01g03427 191 SMART dnaj_3 42 98 IPR001623 -
Tsu01g03427 191 PANTHER - 49 123 - -
Tsu01g03427 191 PANTHER - 1 49 - -
Tsu01g03427 191 CDD DnaJ 50 95 IPR001623 -
Tsu01g03427 191 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 49 - -
Tsu01g03427 191 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 49 123 - -
Tsu01g03427 191 Pfam DnaJ domain 53 103 IPR001623 -
Tsu01g03427 191 ProSiteProfiles dnaJ domain profile. 40 106 IPR001623 -
Tsu01g03427 191 SUPERFAMILY Chaperone J-domain 53 106 IPR036869 -
Tsu01g03427 191 Gene3D DnaJ domain 47 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03427 Tsu-Chr1 42320620 42321270 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03427 44 103 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 53.226 9.56e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03427 - - mtr:MTR_1g060440 172.17