Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03422 ATGGCTATTGAAATTGCATCTGTTGTCTCTAAGTTACAAATGCTATCCACGTCCGATCACGCCTCCGTTGTTTCCATGAACTTGTTTGTTGCACTTCTATGTGCTTGTATTGTCCTTGGTCATCTTCTCGAGGAGAATCGTTGGATGAATGAATCCATCACTGCCCTTTTGATTGGTATTGCCACTGGTGTAGTCATTTTGCTGTTAAGTGGCGGAAAAAGCTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCGCCTATTATATTCAATGCCGGGTTTCAGGTGAAAAAGAAGCAATTTTTCGTCAACTTCATGACTATCACATCGTTTGGTGCTATTGGCACATTAATATCTTGTGTCATCATAACTTTCGGTGCTACCCAAGCTTTTAAGATGATGGATATTGGGCCACTTGATATCGGCGATTACCTAGCTATTGGAGCAATATTTGCCGCAACAGATTCTGTTTGCACGTTGCAGGTGCTAAATCAGGATGAGACACCTTTGTTATACAGTCTTGTATTTGGGGAAGGTGTTGTGAATGATGCTACCTCAGTGGTGCTTTTCAATGCAATTCAAAGCTTTGATCTCGACCGACTCAATCCTTCAATTGCAGTGCACTTTTTGGGCaacttcttttatttgtttatagcAAGCACACTCCTCGGTGTTTTGACAGGTCTGCTTAGTGCTTACGTTATCAAAAAACTGTACATTGGCAGGCACTCTACAGATCGTGAAGTTGCTCTTATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGTTATTCTATCTGAGTGGAATTCTCACGGTATTCTTTTGTGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACCGAGAGTTCAAGAGTCACTACCAAGCATTCTTTTGCTACATTGTCGTTTGTTGCTGAGATATTTATCTTCCTTTATGTTGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTCAGTGATAGTCCTGGAACATCTATAGCAACAAGTGCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTCCCCTTATCCTTTTTATCCAACTTGACTAAAAAACAACAACATCAGAAGATTTCCTTCAGACAGCAAGTGATCATTTGGTGGGCTGGTCTTATGAGAGGCGCTGTTTCAATGGCACTCGCTTATAATCAGTTCACTAGGTCGGGGCACACTCAACTGCGTAGCAATGCAATCATGATCACCAGCACCATCACCGTTGTCCTTTTCAGCACAGTGGTGTTTGGTTTGCTGACTAAGCCACTTATACAACTTCTACTACCTCATCAGAAAACCTCAAACAGCATGACAACCACAGAATCATCTACTCCAAAATCAGTCATTGTCCCACTTCTAGGAGAGCCTCGAGATTCTGAAGCTGATCTTGAAGGTCATGAAATACACCGTCCAAACAGCATTCGTGCCTTACTTTCCACTCCAACTCACACTGTACATCGACTATGGAGAAAATTTGACGATTCATTCATGCGTCCTGTATTTGGTGGCAGGGGTTTTGTTCCTGTAGAACCCGGCTCACCAACTGAACGCAATGGTAATTTATGGcgttaa 1626 0.4127 MAIEIASVVSKLQMLSTSDHASVVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGIATGVVILLLSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITSFGAIGTLISCVIITFGATQAFKMMDIGPLDIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLDRLNPSIAVHFLGNFFYLFIASTLLGVLTGLLSAYVIKKLYIGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIATSAVLLGLILLGRAAFVFPLSFLSNLTKKQQHQKISFRQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIQLLLPHQKTSNSMTTTESSTPKSVIVPLLGEPRDSEADLEGHEIHRPNSIRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPTERNGNLWR 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03422 541 Pfam Sodium/hydrogen exchanger family 29 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu01g03422 541 Gene3D - 146 197 - -
Tsu01g03422 541 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03422 541 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03422 541 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03422 541 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Tsu01g03422 541 PANTHER SODIUM/HYDROGEN EXCHANGER 7 538 IPR018422 GO:0006812|GO:0015299|GO:0016021
Tsu01g03422 541 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03422 Tsu-Chr1 42277502 42282137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03422 6 538 Antiporters AT3G05030 78.771 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03422 - - gmx:732573 913.679