Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03421 ATGGGTTGTGTAATTAGCCGAGAAGCGGAATCGGGTATTGTGTCGGAGGTGAAGGAGGAGAGGAATTTGAGAGTTGAGTCAAGTAGGAAGGTTGAAGAAGTTTCGACGAGTAGAGGTGAGGAGAGTGTGGTAGAGGTTCAGAATGGTGAGAAGGTGAAGAAGGTTaaggagaaggaagagaagagtGATGGTGATGGGGTTCAGCGGCCGAAGGGTGAAAGAAGAAGATCAAAGCCAAACCCGAGGTTAAGTAATCCGCCAAAGCATTTGCAAGGGGAGCAAGTAGCAGCTGGATGGCCATCTTGGCTTACAGCGGTTTGTGGGGAAGCCCTTAATGGGTGGACTCCGCGAAAGGCTGATACGTTCGAGAAAATAGATAAGATCGGTCAAGGAACATATAGTAATGTGTACAAAGCTAAAGATTTATTAACGGGTAAGATTGTTGCATTGAAGAAGGTTCGATTTGACAATTTGGAACCCGAGAGTGTAAAATTCATGGCTAGAGAGATCCTTATACTGCGAAGATTGGATCATCCCAATGTTATGAAGTTAGAAGGTTTAGTTACATCTAGAATGTCATGGAGTTTGTATCTAGTGTTTGAATACATGGTACATGATTTAGCTGGACTTGCTGCAAGCCCCGACATCAAGTTCACAGAGCCTCAGGTCAAATGTTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATACTCGACATGTACTTCATCGCGATATTAAAGGATCAAATCTTCTGATTGACAACGAAGGAGTACTCAAAATTGCCGACTTCGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATTCCTATGACTAATCGTGTGGTTACCCTTTGGTACCGGCCTCCTGAGTTGCTTCTCGGTGCCACAGATTATGGTGTGGGTGTGGACCTTTGGAGTGCGGGTTGCATTTTAGGAGAGTTATTGTACGGGAAACCAATTATGCCTGGTCGTACTGAGGTGGAACAACTGCATAAGATATACAAGCTTTGTGGTTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCTAATGCTACCTTGTTCAAACCACGAGAACCATACAAAAGATGCATAAGAGATGTGTTTAAAGAATTTCCACCTTCTGCTCTGCCCCTTGTCGATACTCTTCTTGCAATTGATCCAGTAGAACGGAAGAGtgcttcagaggctctaagaaGTGAGTTCTTCAGTACAGAACCTTATGCTTGCGATCCTTCTAGTCTTCCGAAGTATCCCCCAACCAAGGAAATGGATGTTAAACGGCGCGATGATGAAGCAAGAAGGTCAAGAGCTGCAGCCAAAGCTCGAGTTGATGGGGGAAAGAAGCATCGGACACGTGATCGTGCTGTAAAAGCTGCTGCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATCGATAGAAGGCGTCTAATCACTCATGCGAATGCTAAGAGCAAGAGTGAAAAGTTTCCTCCGCCGCATGAAGATGGACAACTTGGATTTCCTTTGGGAGCTTCAAACCATATTGATCCAGACATAGTTCCTCATGATGTCCCTTTGGATTCAATGTCATATACCTTTTCAAAGGAACCATTCCAAGCTTGGTCAGGTCCCATAGGTAATAATCCTACTAGCAACGGTTTCACAAAGCGGAAGAAAAACACTGCAAATGATGCATTGGATTTATCAAAACCATATAAAGGAAACCACAAGGATAAGGGtaaaggaaagaaaatcatAGCTTAA 1764 0.4269 MGCVISREAESGIVSEVKEERNLRVESSRKVEEVSTSRGEESVVEVQNGEKVKKVKEKEEKSDGDGVQRPKGERRRSKPNPRLSNPPKHLQGEQVAAGWPSWLTAVCGEALNGWTPRKADTFEKIDKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVMKLEGLVTSRMSWSLYLVFEYMVHDLAGLAASPDIKFTEPQVKCYMHQLLSGLEHCHTRHVLHRDIKGSNLLIDNEGVLKIADFGLASFFDPNRRHPIPMTNRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLYGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRCIRDVFKEFPPSALPLVDTLLAIDPVERKSASEALRSEFFSTEPYACDPSSLPKYPPTKEMDVKRRDDEARRSRAAAKARVDGGKKHRTRDRAVKAAAAPEANAELQYNIDRRRLITHANAKSKSEKFPPPHEDGQLGFPLGASNHIDPDIVPHDVPLDSMSYTFSKEPFQAWSGPIGNNPTSNGFTKRKKNTANDALDLSKPYKGNHKDKGKGKKIIA 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03421 587 PANTHER CELL DIVISION PROTEIN KINASE 46 560 - -
Tsu01g03421 587 MobiDBLite consensus disorder prediction 20 94 - -
Tsu01g03421 587 Gene3D Transferase(Phosphotransferase) domain 1 205 448 - -
Tsu01g03421 587 MobiDBLite consensus disorder prediction 560 575 - -
Tsu01g03421 587 MobiDBLite consensus disorder prediction 418 458 - -
Tsu01g03421 587 MobiDBLite consensus disorder prediction 426 458 - -
Tsu01g03421 587 PANTHER OS01G0367700 PROTEIN 46 560 - -
Tsu01g03421 587 Gene3D Phosphorylase Kinase; domain 1 109 204 - -
Tsu01g03421 587 MobiDBLite consensus disorder prediction 20 80 - -
Tsu01g03421 587 SMART serkin_6 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03421 587 CDD STKc_CDK9_like 122 408 - -
Tsu01g03421 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Tsu01g03421 587 ProSiteProfiles Protein kinase domain profile. 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03421 587 MobiDBLite consensus disorder prediction 540 587 - -
Tsu01g03421 587 Pfam Protein kinase domain 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03421 587 SUPERFAMILY Protein kinase-like (PK-like) 116 414 IPR011009 -
Tsu01g03421 587 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Tsu01g03421 587 MobiDBLite consensus disorder prediction 540 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03421 Tsu-Chr1 42250435 42256527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03421 114 446 Core Cell Cycle Gene Families AT5G10270 52.149 4.48e-120 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tsu01g03421 Pkinase 3.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03421 K08819 - gmx:100817289 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03421 01 42250435 42256527 Tsu07g04530 07 50194381 50198598 ECH
Tsu01g03421 01 42250435 42256527 Tsu01g03421 01 42250435 42256527 ECH
Tsu07g04530 07 50194381 50198598 Tsu01g03421 01 42250435 42256527 PCT