Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03420 ATGAGTGTTATTGTTCGCGAACCAGATGGGCAAATTCGGCTTCTGGTCAAGGGTGCTGTTGAGAGTTTATTGGAACGAAGTTCGTATGTGCAACTTGCTGATGGATCTCTTGTTCCAATAGATGATCAATGTAGGGAACTACTTCTTCAAAGACTCCATGAGATGAGTTCCAAGGGATTGCgttgcttagatttggcatgtAAAGATGAGTTGGAAGAATTTTCAGACTATTATGCAGACACTAATCCTGCTCACAAGAAATTGCTTAATCCAACATACTACTCATCGATTGAAAGTGATTTAGTTTTTGTTGGCATTGTTGGTTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGTAAGCAAGCTGAACAAGTTAAATTATTGTTGAGAGAAAGATGCAAGGTTTTATCTCGAGCTGAGCCTAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACTGAAGATGATGTGAATGATGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAAGGAACTAA 570 0.3807 MSVIVREPDGQIRLLVKGAVESLLERSSYVQLADGSLVPIDDQCRELLLQRLHEMSSKGLRCLDLACKDELEEFSDYYADTNPAHKKLLNPTYYSSIESDLVFVGIVGLRDPPREEVHKAIEDCKQAEQVKLLLRERCKVLSRAEPRHKQEIVRLLKEMGEIVAMTEDDVNDALKLADIGIAMGITGRN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03420 189 Gene3D - 136 187 IPR023214 -
Tsu01g03420 189 PANTHER CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE 127 187 - -
Tsu01g03420 189 PANTHER CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE 12 128 - -
Tsu01g03420 189 PANTHER CALCIUM-TRANSPORTING ATPASE 12 128 - -
Tsu01g03420 189 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 117 IPR023299 GO:0000166
Tsu01g03420 189 PANTHER CALCIUM-TRANSPORTING ATPASE 127 187 - -
Tsu01g03420 189 SUPERFAMILY HAD-like 97 184 IPR036412 -
Tsu01g03420 189 Gene3D - 1 112 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03420 Tsu-Chr1 42247701 42248723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03420 1 187 Primary Pumps ATPases(2) AT4G00900 56.356 2.70e-78 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03420 K01537 - gmx:100800498 294.664