Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03414 ATGCAAGGAAAGATGCCATCTCTAGCAGATCTTGAAACAAGCCCTGGAAGTTCTAGCTTTGAAGTGGTCATAGTTAATCGAACAATTGATCCTGCCCTCGAAGAGCTGGTGCAAATTGCACAATGTATATCATTGGACTGCCCTGTCACCGACATTGGTATTTTGGTACAAAGGCTTGCCGAACTTGTTACAAGCCATATGGGTGGCCCTGTAAAGGATGCTAATATTATATTAGCAAGATGGACAGAAAGAAGTACAGAGTTAAGAACATCTCTTCACACAAGCGTATTACCGCTTGGGTCCTTAGATATTGGGCTCTCTAGGCATCGTGCTTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTGCTTAAAGGTAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTAGTTGATCTCATGGCTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCAAAGGATAATGCCTTTAAGTCTTACAACCCCAAGATTGTTCCCAGTTTTCCTTCCGCTGAGGAAAATGAGGTTTCTTACTCAAGACCTATACTATCATCTAATGGTGAAGGTAGTAGTCAAACTTCTGTGATAAAAGGTAATGCGCCGCCTTGGAATGGAAAATCATATACCGAGAAGTCTGAGTATATGCCTTCAAACTTTGGTTTGAACAGAGACCCTGGCGTCGGTCCTTCTAAACTTCCTAATAGAGGGAGTCCTAACCAACGGGAAAATTTGCCATCGTCATATGGTAATTCTTTGTACAAAGGTACTCTTGGAATGAATGCAGTTGGTGATGGGACAAGATTGAATGTCAATGTTGTGCCATATCCCCAAAACAACCCCAACGACCCTCAGAACCTTTTTGCAGAACTGAACCCATTCTTGATAAAAGGGACTGGGAAGCCTTCTGTGCATAACAAACCTGTGGAAAATAAACCTCCTGAACACggtataaaaaacaaaaatgtttctGGTAGACCTGTGTCACCACTGATGTGGAAGAATCAGCATGCTTACAACGAAGTCCCCAGGAAAAATAATCATAACCCTAATGAATATAACCCTCCTTTATTTTCTCCCAATATTCCTTTCAGATCTGAAAATACTGATCTCGGCACTTCCAATTCATCATAcaattcaaatataaacaatGATATTAGTTCTCAAACTTCAGCACAAATTACTGGTTCAGTCTCACCAGCTGGTGTAGGTGAACTGAACCGGATTGAGGGTCTCGATGCTAATTTTAAAAGGGGTTATTTGGGAAGTTCTCAAAATGTCATGGTTAATGAACCTGAGAACACTGAACTTAGCCATCATGACAGGAGGAAGTGCATATATGACAGATTCATGGGAAGCAGTTTGGAATTAAAAGATTCAGATAGTCCTAGCTCTTCAATTGATTACATTACAAATAGGGTCGATCAAATATTGGACGATGCAGACGTTGGTGAATGTGAGATTCCATGGGAGGATCTGGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGTGAGGTATACCGTGCAGACTGGAATGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGCGCCGCTTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGCTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTCACCCGGCCTCCTAATCTCTCAATCATTTCAGAGTTTCTCCCGAgAGGAAGTTTGTACCGAATTCTTCATCGCCCTAATTGTCAGATCGACGagaaacaaagaataaaaatggCTCTGGATGTGGCTAGGGGTATGAATTGCTTGCACGCCAGCACACCCACAATTGTTCATCGAGATCTGAAGTCCCCAAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGGTTGTCAAGATTGAAGCATAACACATTTTTATCATCCAAATCAACCGCTGGAACGCCGGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCTTCAAATGAGAAGTGTGATGTTTATAGTTTTGGTGTCATCCTATGGGAGCTTGCCACTTTAAGGTTGCCATGGACTGGGATGAATCCTATGCAAGTAGTTGGTGCCGTAGGTTTCCAAAACCGTCGCCTTGAAATTCCTAAGGAAGTTGATCCATTAGTTGCGAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATTTGCGCCCCTCATTTGCACAGCTCACAGTGGCTCTAAAGCCCTTGCAACGGCTGGTTATCCCATCTTATCAAGACATGGTAGCTTCACCTTTGCCTCAGGAGATTTCTGTAAATTCTACCCCATGA 2379 0.414 MQGKMPSLADLETSPGSSSFEVVIVNRTIDPALEELVQIAQCISLDCPVTDIGILVQRLAELVTSHMGGPVKDANIILARWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIKMPCRLLKGSHYTGVEDDAVNIIKLEDEREFLVDLMAAPGTLIPADILNAKDNAFKSYNPKIVPSFPSAEENEVSYSRPILSSNGEGSSQTSVIKGNAPPWNGKSYTEKSEYMPSNFGLNRDPGVGPSKLPNRGSPNQRENLPSSYGNSLYKGTLGMNAVGDGTRLNVNVVPYPQNNPNDPQNLFAELNPFLIKGTGKPSVHNKPVENKPPEHGIKNKNVSGRPVSPLMWKNQHAYNEVPRKNNHNPNEYNPPLFSPNIPFRSENTDLGTSNSSYNSNINNDISSQTSAQITGSVSPAGVGELNRIEGLDANFKRGYLGSSQNVMVNEPENTELSHHDRRKCIYDRFMGSSLELKDSDSPSSSIDYITNRVDQILDDADVGECEIPWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFLPRGSLYRILHRPNCQIDEKQRIKMALDVARGMNCLHASTPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLEIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDMVASPLPQEISVNSTP 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03414 792 Gene3D Phosphorylase Kinase; domain 1 504 588 - -
Tsu01g03414 792 CDD STKc_MAP3K-like 517 760 - -
Tsu01g03414 792 SUPERFAMILY Protein kinase-like (PK-like) 502 783 IPR011009 -
Tsu01g03414 792 MobiDBLite consensus disorder prediction 252 270 - -
Tsu01g03414 792 PANTHER SERINE-THREONINE PROTEIN KINASE 2 784 - -
Tsu01g03414 792 MobiDBLite consensus disorder prediction 319 347 - -
Tsu01g03414 792 Gene3D Transferase(Phosphotransferase) domain 1 590 772 - -
Tsu01g03414 792 ProSiteProfiles Protein kinase domain profile. 511 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03414 792 SMART serkin_6 511 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03414 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Tsu01g03414 792 Pfam Ethylene-responsive protein kinase Le-CTR1 2 164 - -
Tsu01g03414 792 PRINTS Tyrosine kinase catalytic domain signature 671 681 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 PRINTS Tyrosine kinase catalytic domain signature 690 712 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 PRINTS Tyrosine kinase catalytic domain signature 585 598 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 PRINTS Tyrosine kinase catalytic domain signature 624 642 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 PRINTS Tyrosine kinase catalytic domain signature 734 756 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 MobiDBLite consensus disorder prediction 200 219 - -
Tsu01g03414 792 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Tsu01g03414 792 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 2 784 - -
Tsu01g03414 792 Pfam Protein tyrosine and serine/threonine kinase 512 761 IPR001245 GO:0004672|GO:0006468
Tsu01g03414 792 MobiDBLite consensus disorder prediction 200 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03414 Tsu-Chr1 42188049 42196597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03414 2 747 MAP Kinase Kinase Kinase AT1G08720 56.005 0.0 784
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu01g03414 PK_Tyr_Ser-Thr 1.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03414 - - aprc:113870732 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03414 01 42188049 42196597 Tsu01g03414 01 42188049 42196597 ECH
Tsu01g03414 01 42188049 42196597 Tsu07g03768 07 43932875 43934859 PCT