Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03405 ATGATTCACAAAATCGGAAAAGGTGCGGTGGAATGTGCTGTTTGTTTGAACGAGTTTCAAGAGACTGAAAAGTTGCGTTTGATTTCAAAGTGTGATCATGTGTTTCATCCCGAGTGTATTGATGAGTGGCTTGGTTCTCATACCACTTGCCCGGTTTGCAGAGCTAATTTGGTTCCGCGACCGGGTGAATTGGTTCATGGAGTCCCGGTTTTTAATACTGAACCGGAAGACCTCGAGGAACAAAATGATGCtgttgaatcaattcaagagcaTCAAAACGAAGAGGGTGCAGTTAAAGAGTCAACTGAACCACAAGTGTCGAGTTTAAGCAAGATGCTGAACTGGAACCGGATGAGAGGTTCGCAGTCTGGTCAGCCTCGTTGGTTTTCGCGGTCTAACTCGACtggtcatttggtggttcaacCGGGTGAGAATACTGAACAGTTTATTTTGAGGCTGCTGATGGAACGGGGTTATCGAACTGGTGGTGGGGAAGGAAGTAGCAGATGCAAGTCCGTAAGGAGGTTGGACCAGGGTTTACTATCAGACCGATGGGTTTTCATCATGCCACCTTCTTTTCTTGTAAGAGCGTCGCCAATTAGGTCACCAAGGGTAGGTAATAGTGTCGGGGAAGGTAGCTCTGGTTCAACAACTACGACAGTGATGGTTGACTCGCCACGCCCTCCGATTTAA 693 0.4473 MIHKIGKGAVECAVCLNEFQETEKLRLISKCDHVFHPECIDEWLGSHTTCPVCRANLVPRPGELVHGVPVFNTEPEDLEEQNDAVESIQEHQNEEGAVKESTEPQVSSLSKMLNWNRMRGSQSGQPRWFSRSNSTGHLVVQPGENTEQFILRLLMERGYRTGGGEGSSRCKSVRRLDQGLLSDRWVFIMPPSFLVRASPIRSPRVGNSVGEGSSGSTTTTVMVDSPRPPI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03405 230 SMART ring_2 12 53 IPR001841 -
Tsu01g03405 230 ProSiteProfiles Zinc finger RING-type profile. 12 54 IPR001841 -
Tsu01g03405 230 MobiDBLite consensus disorder prediction 203 230 - -
Tsu01g03405 230 MobiDBLite consensus disorder prediction 83 103 - -
Tsu01g03405 230 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 157 - -
Tsu01g03405 230 MobiDBLite consensus disorder prediction 207 224 - -
Tsu01g03405 230 Pfam Ring finger domain 11 54 IPR001841 -
Tsu01g03405 230 SUPERFAMILY RING/U-box 10 62 - -
Tsu01g03405 230 PANTHER RING FINGER DOMAIN-CONTAINING 2 157 - -
Tsu01g03405 230 MobiDBLite consensus disorder prediction 84 98 - -
Tsu01g03405 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 58 IPR013083 -
Tsu01g03405 230 CDD RING-H2_EL5_like 11 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03405 Tsu-Chr1 42081872 42082639 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03405 3 225 Rapid Response to Elicitors AT3G05200 40.506 1.19e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03405 K10664 - gmx:100810865 264.618