Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03402 ATGGCAGCATTCTTTCAAAACGCTGTCGTTTCACCCAAACAAGAATTCGTCGAATtccaagccgaatacgaagaAGAAGTAGAACAACAATTCGACGAAGTTTTAGTCGAACCAGACGAAATTAACGAAACCGAACAATCACCTTCCTCCGCCGTTCCTACCGTCATACTAGCCTTACCAAACGCCTCAGCATCAACCGTCGTAACCGACTCGCCTGAGCCGAAACGGGACCAAATGGAAGAAAAGAACGATTCACGGAAACTGTTTCAGCGTCTTTGGACTGATGAAGATGAGATCGTAATCTTGCAAGGGTTTCTTGATTACAACGCGAATCGTGGATCTTCTTATCATAATGATACTGGTTCGTTTTATGATCAAATTAAGTCGAAGATTCAACTCGATTTCAATAAGAGCCAGCTTGTTGATAAACTTCGAAGGTTGAAGAAAAAGTATCGCAACGTTCTTCAGAAATTTGATTCTGGTAAGGAATTTATCTTCAAAACTCCTCATGATCAAGCTACGTTTGAAATTTCACATAAAATTTGGAACAACGTTACTCCAATTGCTGTTGGCGTTACTGTAGAAGACGATGAAGAAATTAGCCCTAAtcctaaccctaaccctaattcAGCTCATATGATAACACCGGTGAAGAATGAGCTGATTATTGAGAAGAAAACCACATCACGAAAGCGGTCACGAACAACAACTGACGAGAAACGTGAATTGAATGATTCTTTAGGCTTGAATAAGGATAATCATAATAATTCTGCTAATAACAATAGTAgcaatgttgatgatgaaaatgGTGATAAAAGTAATGGTAGTCATCATACACATAACATACCTGGATTGATTGAAGAGACTGTTAAGAGTTGCGTGACGCCGGTGTTGAAGGAGTTATTGAGTCGTAACACAATGGGGAATCCTTTTGGTTTTGGGGGAAGAGGGTTTTCATTGGATCCTATGCCATTTAGTTTTCTGAATTTTGGGAATGGCGAAAAAGTGGTGGATGAGAAGTGGAAGAAGCAACAGATATTGGAGCTGGAAGTGTACTCGAAGCGATTGGAGCTGGTGCAGGATGAGATCAAGGTTGCTTTGGAGGAGTTGCGATCATCTTCCGGAGCTGGAGCTAGAGGAGGAAGCAACAACCATCAATAG 1161 0.3885 MAAFFQNAVVSPKQEFVEFQAEYEEEVEQQFDEVLVEPDEINETEQSPSSAVPTVILALPNASASTVVTDSPEPKRDQMEEKNDSRKLFQRLWTDEDEIVILQGFLDYNANRGSSYHNDTGSFYDQIKSKIQLDFNKSQLVDKLRRLKKKYRNVLQKFDSGKEFIFKTPHDQATFEISHKIWNNVTPIAVGVTVEDDEEISPNPNPNPNSAHMITPVKNELIIEKKTTSRKRSRTTTDEKRELNDSLGLNKDNHNNSANNNSSNVDDENGDKSNGSHHTHNIPGLIEETVKSCVTPVLKELLSRNTMGNPFGFGGRGFSLDPMPFSFLNFGNGEKVVDEKWKKQQILELEVYSKRLELVQDEIKVALEELRSSSGAGARGGSNNHQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03402 386 Pfam Protein of unknown function, DUF573 89 183 IPR007592 GO:0006355
Tsu01g03402 386 MobiDBLite consensus disorder prediction 196 284 - -
Tsu01g03402 386 Coils Coil 349 369 - -
Tsu01g03402 386 MobiDBLite consensus disorder prediction 200 214 - -
Tsu01g03402 386 MobiDBLite consensus disorder prediction 63 83 - -
Tsu01g03402 386 PANTHER BNAANNG10740D PROTEIN 22 374 - -
Tsu01g03402 386 PANTHER BNAANNG10740D PROTEIN-RELATED 22 374 IPR007592 GO:0006355
Tsu01g03402 386 MobiDBLite consensus disorder prediction 249 269 - -
Tsu01g03402 386 Coils Coil 137 157 - -
Tsu01g03402 386 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03402 Tsu-Chr1 42061288 42062900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03402 33 377 GeBP Transcription Factor Family AT5G28040 45.623 8.03e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Tsu01g03402 DUF573 9.2e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03402 - - cam:101492301 418.698