Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03398 ATGGCAGACAAGGCAGTCACCATCCGAACCAGGAAGTTCATGACCAACAGGCTTCTCTCAAGGAAGCAATTTGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAagGCTGAGCTTAAGGAGAAGCTTGCAAGAATCTATGATGTGAAGGACCCAAACACCGTTTTTGTCTTCAAGTTCAGAACTCATTTTGGTGGTGGCAAGTCTACCGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCTAAGAAATATGAACCAAAATACAGACTTATCAGGAATGGACTTGATACCAAGGTTGAAAAGTCTAGGAAACAaatgaaggaaagaaagaacagaTCAAAGAAGATCCGTGGAGTAAAGAAGACCAAGGCTGGCGATGCTGCCAAGGGAGGAAAGAAGAAATAA 414 0.401 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKIRGVKKTKAGDAAKGGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03398 137 Gene3D - 1 132 - -
Tsu01g03398 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu01g03398 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Tsu01g03398 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Tsu01g03398 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Tsu01g03398 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu01g03398 137 MobiDBLite consensus disorder prediction 98 137 - -
Tsu01g03398 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03398 Tsu-Chr1 42028512 42030972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03398 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 1.32e-84 242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03398 01 42028512 42030972 Tsu01g03398 01 42028512 42030972 ECH
Tsu07g04548 07 50327249 50329242 Tsu01g03398 01 42028512 42030972 PCT