Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03395 ATGAATGGAGTAACACACCTTGAAGAAGGTGATTCTGAGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGAtaCAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAAGGCATTTGATGAATATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGTTGTATGATTTCTTACAAAGTCCTGAAGATCTTGAGAGACTTTACTGTGAAATTCATCTATTGAAAACATTGAAACACCAAAACATTATGAAATTTTATACCTCTTGGGTTGATACTGCTAATAGGAACATTAATTTTGTTACTGAAATGTTCACTTCTGGTACACTTAGACAGTATAGGCAAAAGCACAAGAGAGTTAACATTAGAGCGGTGAAGCATTGGTGTATACAGATCCTGAGAGGACTTCACTATCTACATAGCCATGACCCGCCAATAATTCATAGAGATCTCAAATGTGATAACATTTTTGTCAATGGAAATCAAGGAGAAGTCAAAATTGGGGATCTTGGTCTAGCCGCAATTCTTCGGAAATCTCATGCTGCAATTTGTGTCGGAACGCCCGAGTTCATGGCACCAGAAGTATATGAAGAGTCGTATAATGAACTAGTCGACATATATTCCTTTGGGATGTGCATATTAGAGATGGTCACATTTGAATATCCTTATAGCGAATGCACACATCCAGCTCAAATATACAAGAAAGTTATGTCTGGGAAAAAGCCAGATGCTTTGTATAAAGTTAAGGATCCGGAAGTGCGGCAATTTGTTGATAAATGCTTGGCCACAGTGTCTCTAAGACTTTCTGCAAGGGAGCTTCTCGATGACCCTTTTCTTCAAATCGATGATTATGAATATGACTTGAAACCTGTAGACAGTGGAGAATTTGATGACTTTGGTCACCTCTTCAGGAAGCCGCTCTACGATCTTCATCGAGGCTTTAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGTTATGAAGGAGACTCGTATATTCATCCGGCTGATAATGAAGCTTGTGGAATTGAACTTTTTGAGCaccatgatgatgatgacgaacCCTCTGAACATGTTGACATAAGTATCAAGGGCaagaagaaagaagatggaGGCATATTTTTGAGACTAAGAATTTCTGATAAAGAAGGTCACATTCGGAATATTTATTTCCCATTTGACATAGAGCTGGACACAGCCATAAGTGTGGCGACTGAGATGGTTGGAGAACTTGACATTACCGACCAGGATGTTACCAGCATAGCAGATATGATAGACGGGGAAATCGCTTCCTTAGTACCTGAATGGGAATCTGGACCAGGAATCGTCGAAACTCCCCGTTTTGCAGATCAAGGTTTTTGCCGCAATTGTGTGTCTAATCATACTTCAAGTGGCTCCCTCATGGAGTTTCTTTCACATAATCAGGGTAACTTGCAACTTCCCGAATGTTGTAAGCATGGATGTGCTTCAATGCACGGCCGGTTTGAGGAGATTAGGTTCCCATCTGAGGAGTATAACAATCATGTTAGAGAGAATCTGAACATATCAAACGGATCGGATGGCTTGGAATATCAGGGGCTATGGAATCAGCATGAAAGCCGTGAACTCAGTCCGGTAGAGTCAGATCAAAGTCATTCTGATGAACAAAATGAACAAATAGATAAATCAATATTAGCTGAAGATCAAGGACGACAGAATGTTTGGGAAAATAAATTTCTTGTTAGTGCAACAATTTCCCCGAGATATTCATCAGGAACTCATGATTTCTCCAATATCCGATCGCTATATTTTGGTCTTAATGATGATAACAAGAAAGAGGGCCAAAATGAACTGAGATGGCTCAAAGCAAGACACCAAATGGAGTTAAGGGAACGTAAGGATCAACTACTCGGGCTAACAGATAATAAAACCTCTCGTAGCGGTATCGAAGAGCACATAACAGATTATGCCGCCATTCTGTCACTTTCATTGGCAGAAACATTAAACGGACACAACAATGGGATTGGCTTGAAACCTGTTCATAAAAGCAGCCCCAATTCGGACACCGTAAGGAACCAAATTTGCGAGGCGATGGAATCCTCTAGTGGAGAAGGTATGGTTACTGCAAAGAGTTTTTATACTGGCTCGTTGCTTCCGCACTCTCTACACAGGACAGTTTCTCTCCCTGTTGATGCTGTTGATATATAA 2193 0.3967 MNGVTHLEEGDSEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHQNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRQKHKRVNIRAVKHWCIQILRGLHYLHSHDPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAICVGTPEFMAPEVYEESYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVMSGKKPDALYKVKDPEVRQFVDKCLATVSLRLSARELLDDPFLQIDDYEYDLKPVDSGEFDDFGHLFRKPLYDLHRGFSNFSNEYSNGFGYEGDSYIHPADNEACGIELFEHHDDDDEPSEHVDISIKGKKKEDGGIFLRLRISDKEGHIRNIYFPFDIELDTAISVATEMVGELDITDQDVTSIADMIDGEIASLVPEWESGPGIVETPRFADQGFCRNCVSNHTSSGSLMEFLSHNQGNLQLPECCKHGCASMHGRFEEIRFPSEEYNNHVRENLNISNGSDGLEYQGLWNQHESRELSPVESDQSHSDEQNEQIDKSILAEDQGRQNVWENKFLVSATISPRYSSGTHDFSNIRSLYFGLNDDNKKEGQNELRWLKARHQMELRERKDQLLGLTDNKTSRSGIEEHITDYAAILSLSLAETLNGHNNGIGLKPVHKSSPNSDTVRNQICEAMESSSGEGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03395 730 MobiDBLite consensus disorder prediction 535 554 - -
Tsu01g03395 730 CDD STKc_WNK 22 281 - -
Tsu01g03395 730 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Tsu01g03395 730 MobiDBLite consensus disorder prediction 537 554 - -
Tsu01g03395 730 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 719 - -
Tsu01g03395 730 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 719 - -
Tsu01g03395 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Tsu01g03395 730 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03395 730 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Tsu01g03395 730 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03395 730 Gene3D - 373 439 - -
Tsu01g03395 730 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Tsu01g03395 730 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 376 430 IPR024678 GO:0004674|GO:0005524
Tsu01g03395 730 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03395 Tsu-Chr1 41987016 41990647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03395 1 509 MAP Kinase Kinase Kinase AT3G22420 58.409 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Tsu01g03395 Pkinase 8.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03395 K08867 - gmx:100272198 1163.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03395 01 41987016 41990647 Tsu01g03395 01 41987016 41990647 ECH
Tsu07g04550 07 50342300 50345937 Tsu01g03395 01 41987016 41990647 PCT