Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03389 ATGTTTGATGGAGTCCCAGACCAATTCCACCAATTCATAACTCCaagaacatcatcatcatcattaccaCTTCATTTACCTTTCCCTCTTTCAACACCAAATAATAACACTTTTTCTACTTTTGATCCTTATAATCAACAATTACCACTTCAAGTTCAACCAAATAATCTTTTGCACCCATCATTACACCATCACAAAGATGATGAacataagcaacaaaacaatactactactactactactactccTCCTTCAATGAATAACAACTTCCAAATTGATGAAAGAGATCAAAGACAAATTCTACCTCAACTCATTGATCCTTGGACTAATGATGAAGTTCTTGCTCTTTTGAAGATCAGATCCAGCATGGAAAATTGGTTCCCAGATTTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAAGTTGGTTATAAACGTAGTGCAGAAAAATGCAAGGagaaatttgaagaagaaagtagATTCTTCAAcaacattaataataatcataatcagaatcagaatAATTTCGGTAAGAATTTCCGGTTTGTTACGGAGCTTGAAGAGCTTTATcaaggtggtggtggtggtagtgAGAGtgagaataataataatcaagtTGGGACTCAGAAGCCAAACACCGTACAAGACAAAATGGACCAGGGTGAGGATTCAAGAAACGACGATGTTTTGGTGACGAAGAAAAGCGAAGAGGAGGTGTTTGAGAAAAGTACTACAAATGaagagaggaagaggaagagagGTGATAAtagatttgaagtgtttaaggGTTTTTGTGAGAGTGTTGTGAAGAAAATGATGGATCAACAAGAGGAAATGCATAACAAGCTTATTGAAGATATGATTAAAAGAGATGAAGAGAAGTTTAGTAGAGAAGAAGCTTGGAAGAAACAAGAGATGGAGAAGATGAACAAAGAGCTTGAATTAATGGCACAAGAACAAGCTATTGCTGGTGATAGACAAGCTAATATAATTCAATTCTTGAACAAATTCTCAACAAGTACTAATTCTTCTACTTCTTTAGCTTTAATTGCATCTTCAATTCAAAGCTTTGGAATTGGTAAAGAAGACAAATCTAAGGTAACACCTAATTCTTTATCTACATTGCATTCACAAAACCCTAATCTTGAAAATCATGACAAAACTCTTCAACCAACACCTGAAAACCCTAGCTCAGGCAATCCTTCTTCGACTACTACCTTAGCGGTTACGCCACACAAGAACAACGCTATTTCTTCGTATAACGCTATATCTAGCGGCGGTGAGAAAGAGGATATTGGAAGAAGATGGCCAAAAGATGAAGTGTTGGCATTGATAAACTTGAGGTGCAATAACaacaatgaagaaaaagaaggaaacaaCAATGTCAACAACAAAGCACCACTTTGGGAAAGAATATCACAAGGAATGTTGGAGTTAGGATACAAAAGAAGTGCAAAAAGATGTAAAGAGAAATGGGAGAATATAAACAAGTActttagaaaaacaaaagatgCTAATAGGAAAAGATCACTTGATTCAAGAACTTGTCCTTATTTTCATCTATTGAGTAATCTTTATAACCAAGGTAAACTTGTTCTTCAATCTGATCAAAAGCaagaaagtaataataatatgaatgtGGTTGAAGAAAATGTTCAAGAACAAGCTCCACAAGATGAAAAACAAGGTGGTGAGTCTTCTCAAGTGGGGCCTGCATTTGCCGGTGATTTTACTATGTAA 1740 0.308 MFDGVPDQFHQFITPRTSSSSLPLHLPFPLSTPNNNTFSTFDPYNQQLPLQVQPNNLLHPSLHHHKDDEHKQQNNTTTTTTTPPSMNNNFQIDERDQRQILPQLIDPWTNDEVLALLKIRSSMENWFPDFTWEHVSRKLAEVGYKRSAEKCKEKFEEESRFFNNINNNHNQNQNNFGKNFRFVTELEELYQGGGGGSESENNNNQVGTQKPNTVQDKMDQGEDSRNDDVLVTKKSEEEVFEKSTTNEERKRKRGDNRFEVFKGFCESVVKKMMDQQEEMHNKLIEDMIKRDEEKFSREEAWKKQEMEKMNKELELMAQEQAIAGDRQANIIQFLNKFSTSTNSSTSLALIASSIQSFGIGKEDKSKVTPNSLSTLHSQNPNLENHDKTLQPTPENPSSGNPSSTTTLAVTPHKNNAISSYNAISSGGEKEDIGRRWPKDEVLALINLRCNNNNEEKEGNNNVNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKRSLDSRTCPYFHLLSNLYNQGKLVLQSDQKQESNNNMNVVEENVQEQAPQDEKQGGESSQVGPAFAGDFTM 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03389 579 Gene3D - 108 163 - -
Tsu01g03389 579 Gene3D - 436 501 - -
Tsu01g03389 579 ProSiteProfiles Myb-like domain profile. 107 159 IPR001005 -
Tsu01g03389 579 Coils Coil 303 323 - -
Tsu01g03389 579 ProSiteProfiles Myb-like domain profile. 435 496 IPR001005 -
Tsu01g03389 579 SMART sant 432 498 IPR001005 -
Tsu01g03389 579 SMART sant 104 161 IPR001005 -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 551 579 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 361 413 - -
Tsu01g03389 579 PANTHER - 16 571 - -
Tsu01g03389 579 CDD GT1 434 503 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 74 90 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 366 413 - -
Tsu01g03389 579 Pfam Myb/SANT-like DNA-binding domain 106 188 IPR044822 -
Tsu01g03389 579 Pfam Myb/SANT-like DNA-binding domain 434 523 IPR044822 -
Tsu01g03389 579 PANTHER TRIHELIX TRANSCRIPTION FACTOR GTL2 16 571 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 190 252 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 216 252 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 57 90 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 551 565 - -
Tsu01g03389 579 MobiDBLite consensus disorder prediction 195 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03389 Tsu-Chr1 41919075 41921760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03389 1 528 Trihelix Transcription Factor Family AT5G28300 41.030 7.24e-102 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g03389 Myb_DNA-bind_4 4.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03389 - - gmx:100804367 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03389 01 41919075 41921760 Tsu01g03389 01 41919075 41921760 ECH
Tsu07g04557 07 50392603 50394907 Tsu01g03389 01 41919075 41921760 PCT