Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03388 ATGGAGCAGTATGAAGtacttgagcaaattggaaaaGGTGCTTTTGGTTCTGCACTTCTTGTGAGACATAAACATGAGAAGAAAAAATATGTGCTTAAGAAGATTAGACTTGCCCGCCAAACTGAGCGGTCTCGCAGATCTGCACACCAGGAGATGGAGCTTATCTCTAAATTACGAAACCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAGACTAATGGTGTTCTGTTTCCTGAGGAGAAACTTTGCAGATGGCTCGTTCAACTTCTAATGGCACTTGACTACCTGCACATGAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACAAAAGATCGCGACATACGTCTCGGTGATTTTGGACTTGCCAAAATGTTGACTTCTGACGATCTTGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTAGGATGTTGTATATACGAAATGGCAGGACAAAAGCCTGCATTCAAAGcatttGATATACAAGCATTGATTATCAAGATTAGTAAGTCCATAGTGGCTCCACTACCAACAAAATATTCTAGTTCATTTCGAAGTCTGGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTGAGGCCCAGTGCTTCTGAGCTTCTTGGGCATCCACATCTTCAATCTTATGTTCTAAAGATCCATCTCAAACTCAATAGCCCCAGGCGAAGTACATTGCCTGTTCATTGGCGAGAGTCAAAATACACAAAGAAAACTAGATTTTTAGTTCCAAAAGATGATACTGTCGGTAGGGATAAGCGCTATTCTTATAGTAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACCCTAGAAATAGGTTGTACATCTGATCATTTGAGTCAAAGGTTAGCAGAATTATGTACAGGAGATAGCCGTGACATGAAGTCAGTCCGTAAACCTGTTGTTTCCAGAACTTCTAGTATTACTAAGACTCCAAAGCTCACTACATCAAAAGTTTCTGCCACGAACAGGAAATCAATGGAACCCTCAAAGAATCATAAGCTCCCTGTTTCACATAGCATCACAAAATCTGCTCATACAAATCGCAGAGCATCATTTCCTTTGTCAACAAGGGGCGGTATTCAGCAGCCTCCTTTCAGGCCCAGTGATGGTTTGCTTAGCCGTGTGTCTTCACCAGACATCTCAGTTAACTCTCCCCGTATTGATAGGATAGCTGAATTCCCATTAGCATCATATGAAGATTGTTTGTTCCCTATCAATAAAACGTCAACTGCCGCACAAGGTTCCTTAGGTTTCCCATCTCGTGACAATTACTCAACTGTGATAGACAAATGCACAATAGAAGTCAGTGATAGAGCCTCTGTTAAGCCTAGTAGTACCGATGATTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATTCATGAAGATAAAAGTGGTTCGTCTGATCAAAATGCAACGGCAGGTGCATCAAGCTACACATCTTCAGACTTGCAGCGCCGGCAGTTTGACACTTCATCTTTTCAACAAAGGGCTGAAGCCTTAGAAGGGTTGCTTGAGTTTAGTGCAAGATTGCTCCAGCAAGCTAGGTACGATGAACTTGGAGTTTTGTTGAAACCATTTGGTCCGGAGAAAGTTTCGCCAAGAGAAACTGCTATCTGGTTGAGCAAGAGCTTCAAAGGGAACACTAACAACACGGAAGAGTCCCCGTAA 1854 0.4159 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKTNGVLFPEEKLCRWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAGQKPAFKAFDIQALIIKISKSIVAPLPTKYSSSFRSLVKSMLRKNPELRPSASELLGHPHLQSYVLKIHLKLNSPRRSTLPVHWRESKYTKKTRFLVPKDDTVGRDKRYSYSNDRTLNPSVSGADQDSVCSTLEIGCTSDHLSQRLAELCTGDSRDMKSVRKPVVSRTSSITKTPKLTTSKVSATNRKSMEPSKNHKLPVSHSITKSAHTNRRASFPLSTRGGIQQPPFRPSDGLLSRVSSPDISVNSPRIDRIAEFPLASYEDCLFPINKTSTAAQGSLGFPSRDNYSTVIDKCTIEVSDRASVKPSSTDDWQGIKRSMLKEIHEDKSGSSDQNATAGASSYTSSDLQRRQFDTSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSFKGNTNNTEESP 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03388 617 MobiDBLite consensus disorder prediction 528 545 - -
Tsu01g03388 617 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tsu01g03388 617 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03388 617 CDD STKc_Nek 3 258 - -
Tsu01g03388 617 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tsu01g03388 617 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03388 617 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03388 617 MobiDBLite consensus disorder prediction 360 386 - -
Tsu01g03388 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu01g03388 617 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Tsu01g03388 617 MobiDBLite consensus disorder prediction 357 407 - -
Tsu01g03388 617 PANTHER SERINE/THREONINE-KINASE NEK4 1 602 - -
Tsu01g03388 617 MobiDBLite consensus disorder prediction 393 407 - -
Tsu01g03388 617 MobiDBLite consensus disorder prediction 522 545 - -
Tsu01g03388 617 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 602 - -
Tsu01g03388 617 SUPERFAMILY Protein kinase-like (PK-like) 1 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03388 Tsu-Chr1 41891394 41897654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03388 10 260 MAP Kinase Kinase Kinase AT1G53570 32.812 7.49e-39 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu01g03388 Pkinase 1.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03388 K08857 - gmx:100804898 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03388 01 41891394 41897654 Tsu01g03388 01 41891394 41897654 ECH