Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03379 ATGGCTTCCGAAGGATTAGGCGATGATTTCTTCGAGCAGATCTTAGCAGTACCTGAAAATGGAGTTGGATATGGAAGAAACATGGATCATATTGGAGGAGTATTACAATTGGGATCAACAACTACTACACCTGGTGGTGGTTCTATGAGAAGTGGAATAATGCCGTTGGGGTTAAATTTGGAACAAAATCAGCATCATGGATTTCTTAGACACCAACAAGATGCAACACGGTTTGTTGATAACGTTGTTGAGAGTAACATTactaataacaacaacaacactcaTCATCAACATCTTCGTCTTCATGATATCAATAATcataacaacaataacaacaacaacacatctTCTTCACCTTCTTCTACTCAAGGAATCACTGATAGGGATTCAATGCACATGAGAGGTTTATTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGCCCTATGCTCCCATCTCCACCTCCTCAACCCCAACTGCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCCACCAAATCCGGCATCTGTTACAGCCATGCCACAAGCCCCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCAACAGACCCCCACAGCATTGCTGAAAGGTTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGCATCAACAAGACGGACAAAGCAGCAATGCTTGACGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAGCTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACATAGAAGGTGGAGCTAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCATTCATAG 1086 0.4273 MASEGLGDDFFEQILAVPENGVGYGRNMDHIGGVLQLGSTTTTPGGGSMRSGIMPLGLNLEQNQHHGFLRHQQDATRFVDNVVESNITNNNNNTHHQHLRLHDINNHNNNNNNNTSSSPSSTQGITDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQHQQHFQSQPPNPASVTAMPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03379 361 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 5 347 - -
Tsu01g03379 361 MobiDBLite consensus disorder prediction 103 128 - -
Tsu01g03379 361 MobiDBLite consensus disorder prediction 146 189 - -
Tsu01g03379 361 MobiDBLite consensus disorder prediction 165 184 - -
Tsu01g03379 361 Pfam Helix-loop-helix DNA-binding domain 209 253 IPR011598 GO:0046983
Tsu01g03379 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 263 IPR036638 GO:0046983
Tsu01g03379 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Tsu01g03379 361 SMART finulus 210 259 IPR011598 GO:0046983
Tsu01g03379 361 Gene3D - 199 261 IPR036638 GO:0046983
Tsu01g03379 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 347 - -
Tsu01g03379 361 MobiDBLite consensus disorder prediction 104 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03379 Tsu-Chr1 41802401 41809701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03379 171 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.016 3.76e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g03379 HLH 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03379 - - gmx:100807570 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02756 01 32239934 32244731 Tsu01g03379 01 41802401 41809701 ECH
Tsu01g03379 01 41802401 41809701 Tsu01g03379 01 41802401 41809701 ECH