Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g03379 | ATGGCTTCCGAAGGATTAGGCGATGATTTCTTCGAGCAGATCTTAGCAGTACCTGAAAATGGAGTTGGATATGGAAGAAACATGGATCATATTGGAGGAGTATTACAATTGGGATCAACAACTACTACACCTGGTGGTGGTTCTATGAGAAGTGGAATAATGCCGTTGGGGTTAAATTTGGAACAAAATCAGCATCATGGATTTCTTAGACACCAACAAGATGCAACACGGTTTGTTGATAACGTTGTTGAGAGTAACATTactaataacaacaacaacactcaTCATCAACATCTTCGTCTTCATGATATCAATAATcataacaacaataacaacaacaacacatctTCTTCACCTTCTTCTACTCAAGGAATCACTGATAGGGATTCAATGCACATGAGAGGTTTATTTTCAACGTTTGGACAATTGCATACTCCTACTCATGCTCAACCTGTACGCCCTATGCTCCCATCTCCACCTCCTCAACCCCAACTGCATCTTCACCATCAACACCAACAGCACTTTCAGAGCCAGCCACCAAATCCGGCATCTGTTACAGCCATGCCACAAGCCCCTGGCATCCGCCCTCGAGTGCGAGCAAGAAGAGGCCAAGCAACAGACCCCCACAGCATTGCTGAAAGGTTGCGTCGTGAAAGAATCGCGGAAAGAATGAAGGCATTACAGGAGTTAGTTCCAAGCATCAACAAGACGGACAAAGCAGCAATGCTTGACGAAATTGTTGATTATGTGAAGTTTCTTAGGCTCCAAGTTAAGGTCTTGAGCATGAGTAGACTTGGTGGAGCTGGTGCAGTTGCTCAGCTTGTAGCTGATGTTCCTGTTTCTGCTGTGGAGGGGGACGACATAGAAGGTGGAGCTAACCAGCAAGCCTGGGCGAAGTGGTCGAACGATGGAACAGAACAACAAGTGGCTAAACTTATGGAAGAAGATGTTGGTGCAGCTATGCAACTTCTTCAATCAAAGGCACTTTGTATCATGCCTATATCTCTAGCCTCAGCAATTTTTCGTATGCCTCAATCAGACACATCAACAATCATCAAGCCTGAATCAAACAACAGCCATTCATAG | 1086 | 0.4273 | MASEGLGDDFFEQILAVPENGVGYGRNMDHIGGVLQLGSTTTTPGGGSMRSGIMPLGLNLEQNQHHGFLRHQQDATRFVDNVVESNITNNNNNTHHQHLRLHDINNHNNNNNNNTSSSPSSTQGITDRDSMHMRGLFSTFGQLHTPTHAQPVRPMLPSPPPQPQLHLHHQHQQHFQSQPPNPASVTAMPQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPVSAVEGDDIEGGANQQAWAKWSNDGTEQQVAKLMEEDVGAAMQLLQSKALCIMPISLASAIFRMPQSDTSTIIKPESNNSHS | 361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g03379 | 361 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 5 | 347 | - | - | |
Tsu01g03379 | 361 | MobiDBLite | consensus disorder prediction | 103 | 128 | - | - | |
Tsu01g03379 | 361 | MobiDBLite | consensus disorder prediction | 146 | 189 | - | - | |
Tsu01g03379 | 361 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
Tsu01g03379 | 361 | Pfam | Helix-loop-helix DNA-binding domain | 209 | 253 | IPR011598 | GO:0046983 | |
Tsu01g03379 | 361 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 202 | 263 | IPR036638 | GO:0046983 | |
Tsu01g03379 | 361 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 204 | 253 | IPR011598 | GO:0046983 | |
Tsu01g03379 | 361 | SMART | finulus | 210 | 259 | IPR011598 | GO:0046983 | |
Tsu01g03379 | 361 | Gene3D | - | 199 | 261 | IPR036638 | GO:0046983 | |
Tsu01g03379 | 361 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 347 | - | - | |
Tsu01g03379 | 361 | MobiDBLite | consensus disorder prediction | 104 | 128 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g03379 | Tsu-Chr1 | 41802401 | 41809701 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g03379 | 171 | 357 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G02590 | 73.016 | 3.76e-79 | 241 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Tsu01g03379 | HLH | 2.6e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g03379 | - | - | gmx:100807570 | 392.504 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu01g02756 | 01 | 32239934 | 32244731 | Tsu01g03379 | 01 | 41802401 | 41809701 | ECH | |
Tsu01g03379 | 01 | 41802401 | 41809701 | Tsu01g03379 | 01 | 41802401 | 41809701 | ECH |