Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03378 ATGACCAGCGTAACTGACGCTGATCGAGACAACTACAACATGATAAACTTCGAAGAGACCGAGTTACGACTTGGTCTCCCTGGAGCTGGTGATCATGTCGAGGTGCCGGTTAAAAGCAGTTGTGGAAAAAGAGGTTTCTCAGAAACTGGTAATATGGATTTGAAGCTTAATCTTTCTTCAACTAATGACTctgcttcatcttcttcaactaTAGCTACAAACAAAGGCATAGAGAAAACTTCTACTCCTTCTATTGCTACTGCACCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCGGTTAGATCATTTAGAAAGAACATAGTAAATGTTCAAAAGAGTAACAATGAATCAGAAGCAGAAAAGAGTAcaagtggtggtggtggtggaaatGGAGCATTTGTGAAGGTGAGTATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCATTCACAATTGACAATTGTGGGTCACAAGTTACCAAAGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAAATGTTCGTTCAATCCTGCAAGCGTCTCCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 756 0.3955 MTSVTDADRDNYNMINFEETELRLGLPGAGDHVEVPVKSSCGKRGFSETGNMDLKLNLSSTNDSASSSSTIATNKGIEKTSTPSIATAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEAEKSTSGGGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03378 251 MobiDBLite consensus disorder prediction 59 88 - -
Tsu01g03378 251 Gene3D - 130 245 - -
Tsu01g03378 251 SUPERFAMILY CAD & PB1 domains 128 232 - -
Tsu01g03378 251 MobiDBLite consensus disorder prediction 59 93 - -
Tsu01g03378 251 ProSiteProfiles PB1 domain profile. 133 233 IPR000270 GO:0005515
Tsu01g03378 251 Pfam AUX/IAA family 19 242 IPR033389 -
Tsu01g03378 251 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 244 - -
Tsu01g03378 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 244 IPR003311 GO:0005634|GO:0006355
Tsu01g03378 251 MobiDBLite consensus disorder prediction 111 126 - -
Tsu01g03378 251 MobiDBLite consensus disorder prediction 111 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03378 Tsu-Chr1 41754903 41759473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03378 137 241 B3 DNA Binding Superfamily AT4G23980 33.333 3.13e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu01g03378 AUX_IAA 5.1e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03378 K14484 - pop:7474609 322.013