Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03363 ATGGCCGCCACCACCACCGCCAAGCCAAAGAAAACAACCACCGCTTCAAAGAAACCACTCTCTCATCCAACATACGCAGAGATGATAACTGAAGCAATCGTGAGTCTGAAAGAACGAACAGGATCAAGCCAATACGCGATAACAAAATTCATTGAAGAGAAACACAAGGAGTTATCACCAACCTATCGTAAGCttgttcttcttcatctcaAAAAATTAGTCGCATCTGAAAAACTCGTTAAGGTCAAAAACTCGTTCAAACTTGCACCGGCTGTTAAGACCTCAATTGCTAAAGCTGCTGCTCCGGCGAAGGCTAAAATTGCTGCTCCGGCAAAGGCTAAATCTGCTCCGGCGAAGGCTAAGGCTGTTACTAAGACTAAGCCAGCCGTTAAGCCTAAGGCTAAAGCTGCGGTTAAACCTAAGGCTGCAGCGAAGCCAAAAGCTGTTGCGAAGCCGAAAGCTAAGAGTGTTAAGGCTACGCCGGTGAAGAAGGTTGTTAAGAAGGTGGCTGCGAAGAAGGCGAAGAGTGTGAAATCGCCggtgaagaaagtgaagaaggCGAAGAAATGA 570 0.4404 MAATTTAKPKKTTTASKKPLSHPTYAEMITEAIVSLKERTGSSQYAITKFIEEKHKELSPTYRKLVLLHLKKLVASEKLVKVKNSFKLAPAVKTSIAKAAAPAKAKIAAPAKAKSAPAKAKAVTKTKPAVKPKAKAAVKPKAAAKPKAVAKPKAKSVKATPVKKVVKKVAAKKAKSVKSPVKKVKKAKK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03363 189 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu01g03363 189 Gene3D - 16 104 IPR036388 -
Tsu01g03363 189 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g03363 189 MobiDBLite consensus disorder prediction 108 161 - -
Tsu01g03363 189 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu01g03363 189 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu01g03363 189 PRINTS Histone H5 signature 105 119 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu01g03363 189 PRINTS Histone H5 signature 135 152 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu01g03363 189 PRINTS Histone H5 signature 157 176 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tsu01g03363 189 MobiDBLite consensus disorder prediction 126 161 - -
Tsu01g03363 189 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu01g03363 189 PANTHER HISTONE H1 5 189 - -
Tsu01g03363 189 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g03363 189 CDD H15 21 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu01g03363 189 MobiDBLite consensus disorder prediction 170 189 - -
Tsu01g03363 189 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tsu01g03363 189 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 5 189 - -
Tsu01g03363 189 SUPERFAMILY "Winged helix" DNA-binding domain 18 101 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03363 Tsu-Chr1 41610975 41611893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03363 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 36.364 1.12e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03363 K11275 - gmx:100810590 117.472