Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03353 ATGGGGACTCCAGTGAATATCATTGTGGGTTCTCATGTCTGGGTGGAAGACCCAGAGGAAGCTTGGGTTGACGGACAGGTATCAAATATCAATGGAAAGGATGCTGAAATTGTAACTACCCATGGAAAAAAGGTTGTTGCAATGTTATCAAAAATATATCTTAAGGATATGGAAGCTCTTCCTGGTGGAGTGGATGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTTCTACAGAACTTAAAAGCTAGATAtgaattgaataaaatatatACTTATACTGGAAATATTCTGATTGCCATAAATCCATTCCAAAGGCTGCCTCATATTTATGGTGCACACGCGATGCAGCAATACAAGGGAGCGCCACCTGGAGAATTAAGCCCTCATGTATTTGCAGTAGCTGATGTTGCATATAGAGCAATGGTTAATGAAGGGAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATTCCTAGCTTTCCTAGGTGGTAGAGCTGTGACTGAAGGAAGAACAATTGAACAACAAGTTCTAGAATCAAATCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGCCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATGAGAGTGGAAGAATCTCAGGAGCAGCCATCCGAACATACCTTCTAGAGAGATCTCGGGTCTGTCAAATTAATGATCCTGAACGAAACTACCACTGCTTTTATTTCCTTTGTGCTGCACCACAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCACAATGCTATGAACTTGCCGATGTAAATGATGCTAATGAGTATCTTGCCACCCGGAGAGCTATGGGTATTGTTggaattagtcaaaaaaatcaGGATGCCATTTTCAGAATTGTTGCTGCAATTCTTCATATTGGTAATATTGATTTTGCCAAAGGAAAGGAAATTGACTCATCAATTCCAAAAGACGACAAAGCCAAGTTCCACCTGAAAACAGCTGCAGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACTCCTGAAGAAGTTATAAAACGGAGCCTTGACCCAGGAAGTGCAACAGTCAGTAGAGATGGACTGGCAAAGACAATTTATTCTCGGCTGTTTGATTGGCTGGTAGACAAGATTAATAATTCAATTGGACAAGACCCCAATTCTAAATGTTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATTGAACAgTTTTGAGCAGTTCTGCATTAACTTCACAAATGAAAAGTTGCAGCAACATTTCAATCAGGCAAAATTTCGGTCTAAATTATGCACTCCAAAAGAATACACAAAGGAGCAGATCAATTGGAGCTACATTGAATTTGTGGACAACCAAGATGTTTTGGACCTTATTGAAAAgAAACCAGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAAACGTTTGCAAACAAGCTTTATCAAACATTTATGAAAAACAAGCGCTTCATTAAGCCAAAATTGTCTCAAACAGATTTCACCATTGCTCATTATGCTGGAGAGGTGACTTACCAATCTGAccaatttttagacaaaaataagGATTATGTGGTTCCTGGACATCAAGAATTATTGATTGCTTCCACATGCCCTTTTGTATCTGACCTTTTTCCACCACTTCCAGAAGAGACATCAAAATCTTCTAAATTTTCTTCATTAGGTTCTCGTTTTAAGATACAACTGCAGCAACTAATGGAAACATTAAGTTCTACGGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTCAAGAGTGTCAATATTATGCATCAACTTCGTTGTGGTGGTGTGTTGGAGGCTATCAGAATCAGTTGTGCTGGCTACCCTACACGCCGCCCTTTCCTTGAATTTGCCAACAGATTTAGTCTCCTTGCTCCAGAGGCCATGGAAGCAAACTGTAATGAAAAAAATGCTTGCCAAAAGATTCTGGAAAAGACGGGGCTTAAAGGATATCAGATTGGAACAACAAAGGTATTCTTGAGAGCTGGTCAGATAGCTGAACTAGATGCTCGGAGAGCTCAATTACTTAGTAATGCAGCAAAAGTTATACAATGGCGTGTACGGACCCATCAAACTCGGAAACATTATCTTGCATTGCGAAAGAAGACCATATATGCACAGTCATGGTGGAGAGGAAGACTTGCATTCAAACAATATGTGAAACTAATAAAGGAGGCCTCTGCTGTGAAAATTCAAAAGAACATACGCGGATATGAAGCTAGGAAGGCTTATAAAGAACTTCATATGTCAGTACTTACTTTGCAAACAGCGTTAAGGGCCATTGCTGCTCGCAAGGCGTTCAGATTTGAGAAACAGACCAAAGCTTCCATCATTATTCAGGCTCGGTGGCGGTGCCATAAAGCTTCCTTACATTATAAGAGGCTTAAAAAAGGTTCAATAGTTACACAATGTAGATGGAGGGGGCGTTTAGCTAGGAGACATCTTAGGAAACTGAAAATGGCTGCAAGAGATACTGACACACTTCAAGATGCAAAGAGTAAGCTTGAAAAACAAGTAGAGGAACTTACTCGGCGTCTCCAACTGGAAACAGATTTAAGGGCTGCAAGAGATACTGATGCACTTCAAGAAGCAAAGAATAAGCTTGAAAAACAAGTGGAGGAACTTACTTGGCGTCTCCAACTGGAAAAAGGTTTAAGGATCAATCTACAAGAATTCAAAGCACAGGAGGTAGCAAAACTGCAGAATTCATTGCAGGAGATGAAGAGAAAAGTTGATGAAGCAAATGCTCTTCTTCTCAAGGAGCGAGAGAATGCAATAAATGCTATTGAAGTAGCATCTCCTGTCACTAAAGAAGTGAAGGTTCTTGTTGAAGATGGAGAGAAGATTAAGACACTGAAAATGGAAATTGAGATCCTAAAGACTTCACTCAAGTTAGAGAAACAGAAAGCCAAAGactttgaaagaaaatataatcaagCTAAGATTTGTAGTGAAGAAAGAGGTAAAAGGTTAGAAGACACCGAGAAGAAGCTTCGTCAGCTCCAAGAATCAATGACCAgGGTTACTTCTCATAAGCATAAAAGTCATCATCAGAAGCTGGAAGGGAAGATAACTAATTTAGAATCAGAGAATAAGATCAAGTGTTCAGAGATTAGAGAGCTGCTGAAAGTGGACATATTGCTGTGGGATGCAAATACATCTTTGGAACTTCATAGCACATCAATGAACCAGAGGGAATCCTCTGAAATGGAGGATAAGCCACAGATCTCACTAAATGAGAAACAACAGAAGAATGAAGAGTTATTCATTAGATATATTGCACAATCTCTAGGTTTTTCTGGGAACAGACTAATTGCTGCTTGTATCTTGTACAAATGTCTCTTGAATTGGAGATCATTTGAAGTTGAGGGTATAAGCACCAGTGCTTACGATTGTATCATCCAAACTAGTGGCCATGCAATTGAGAACATACTAAAAGCAGGCAGTTATGGTGGAATGGCTCTACACGTCATCACTCTTCGTCAACAACCTTGTTTGGGAGGATGA 3693 0.3899 MGTPVNIIVGSHVWVEDPEEAWVDGQVSNINGKDAEIVTTHGKKVVAMLSKIYLKDMEALPGGVDDMTKLSYLHEPGVLQNLKARYELNKIYTYTGNILIAINPFQRLPHIYGAHAMQQYKGAPPGELSPHVFAVADVAYRAMVNEGKSNSILVSGESGAGKTETTKMLMQFLAFLGGRAVTEGRTIEQQVLESNPVLEAFGNAKTARNNNSSRFGKFVEIQFDESGRISGAAIRTYLLERSRVCQINDPERNYHCFYFLCAAPQEEIEKYKLGNPKSFHYLNQSQCYELADVNDANEYLATRRAMGIVGISQKNQDAIFRIVAAILHIGNIDFAKGKEIDSSIPKDDKAKFHLKTAAELLMCDADALEDALCKRVMITPEEVIKRSLDPGSATVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKLNSFEQFCINFTNEKLQQHFNQAKFRSKLCTPKEYTKEQINWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFMKNKRFIKPKLSQTDFTIAHYAGEVTYQSDQFLDKNKDYVVPGHQELLIASTCPFVSDLFPPLPEETSKSSKFSSLGSRFKIQLQQLMETLSSTEPHYIRCVKPNNLLKPAIFKSVNIMHQLRCGGVLEAIRISCAGYPTRRPFLEFANRFSLLAPEAMEANCNEKNACQKILEKTGLKGYQIGTTKVFLRAGQIAELDARRAQLLSNAAKVIQWRVRTHQTRKHYLALRKKTIYAQSWWRGRLAFKQYVKLIKEASAVKIQKNIRGYEARKAYKELHMSVLTLQTALRAIAARKAFRFEKQTKASIIIQARWRCHKASLHYKRLKKGSIVTQCRWRGRLARRHLRKLKMAARDTDTLQDAKSKLEKQVEELTRRLQLETDLRAARDTDALQEAKNKLEKQVEELTWRLQLEKGLRINLQEFKAQEVAKLQNSLQEMKRKVDEANALLLKERENAINAIEVASPVTKEVKVLVEDGEKIKTLKMEIEILKTSLKLEKQKAKDFERKYNQAKICSEERGKRLEDTEKKLRQLQESMTRVTSHKHKSHHQKLEGKITNLESENKIKCSEIRELLKVDILLWDANTSLELHSTSMNQRESSEMEDKPQISLNEKQQKNEELFIRYIAQSLGFSGNRLIAACILYKCLLNWRSFEVEGISTSAYDCIIQTSGHAIENILKAGSYGGMALHVITLRQQPCLGG 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03353 1230 PRINTS Myosin heavy chain signature 485 513 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 Gene3D Myosin VI head, motor domain, U50 subdomain 312 604 - -
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 786 815 IPR000048 GO:0005515
Tsu01g03353 1230 Gene3D - 670 733 - -
Tsu01g03353 1230 Gene3D Kinesin motor domain 65 665 IPR036961 -
Tsu01g03353 1230 PANTHER MYOSIN-9 916 1205 - -
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 761 790 IPR000048 GO:0005515
Tsu01g03353 1230 Pfam IQ calmodulin-binding motif 740 758 IPR000048 GO:0005515
Tsu01g03353 1230 Pfam IQ calmodulin-binding motif 861 878 IPR000048 GO:0005515
Tsu01g03353 1230 Pfam IQ calmodulin-binding motif 835 855 IPR000048 GO:0005515
Tsu01g03353 1230 Pfam IQ calmodulin-binding motif 788 807 IPR000048 GO:0005515
Tsu01g03353 1230 Gene3D - 836 885 - -
Tsu01g03353 1230 Gene3D - 787 835 - -
Tsu01g03353 1230 Gene3D - 737 786 - -
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 809 838 IPR000048 GO:0005515
Tsu01g03353 1230 SMART MYSc_2a 57 736 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 SMART iq_5 833 855 IPR000048 GO:0005515
Tsu01g03353 1230 SMART iq_5 856 878 IPR000048 GO:0005515
Tsu01g03353 1230 SMART iq_5 785 807 IPR000048 GO:0005515
Tsu01g03353 1230 SMART iq_5 808 830 IPR000048 GO:0005515
Tsu01g03353 1230 SMART iq_5 737 759 IPR000048 GO:0005515
Tsu01g03353 1230 SMART iq_5 760 782 IPR000048 GO:0005515
Tsu01g03353 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 885 IPR027417 -
Tsu01g03353 1230 PANTHER MYOSIN-9 6 916 - -
Tsu01g03353 1230 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 Gene3D - 439 626 - -
Tsu01g03353 1230 PANTHER MYOSIN 916 1205 - -
Tsu01g03353 1230 PANTHER MYOSIN 6 916 - -
Tsu01g03353 1230 Coils Coil 880 914 - -
Tsu01g03353 1230 Coils Coil 1046 1073 - -
Tsu01g03353 1230 ProSiteProfiles Myosin motor domain profile. 62 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 788 IPR027417 -
Tsu01g03353 1230 Coils Coil 916 947 - -
Tsu01g03353 1230 Gene3D - 252 310 - -
Tsu01g03353 1230 Coils Coil 952 986 - -
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 738 765 IPR000048 GO:0005515
Tsu01g03353 1230 CDD MYSc_Myo11 76 723 IPR036018 -
Tsu01g03353 1230 Coils Coil 1011 1038 - -
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 834 861 IPR000048 GO:0005515
Tsu01g03353 1230 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 Pfam Myosin head (motor domain) 64 723 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu01g03353 1230 ProSiteProfiles IQ motif profile. 857 886 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03353 Tsu-Chr1 41498822 41515263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03353 1 1204 Myosins gene family AT1G54560 69.861 0.0 1740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03353 K10357 - gmx:100816792 1826.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03353 01 41498822 41515263 Tsu01g03353 01 41498822 41515263 ECH