Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03345 ATGGCAGAACCTGCGATTGCTTTGGGTCTCATACGGGATGGTGCTTTGCAGAATGCTACGGCGGCTGAGCCTGGTGCGGCGCTAATTGGTGAAGCAGAACCTGCAATTGCTTTGGGTCTGATACGGGCTGGTGCTTTGCAAAATGCCACAACGGCTGAGCCCGGTGCATATTTGGCTGCTGTTAATTGGAAAATTCGACTACAGAGTTTGGAATGGATGCTGGTGAACATCTTGGGGAGTATATGTTGCTTAATTGATGGCATATGTTGCCTAATTGATGGGCAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCCAAAAGACTTGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAAAATCAGCTTCTTTTGGGAATCCGTTGA 408 0.4681 MAEPAIALGLIRDGALQNATAAEPGAALIGEAEPAIALGLIRAGALQNATTAEPGAYLAAVNWKIRLQSLEWMLVNILGSICCLIDGICCLIDGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03345 135 Pfam B3 DNA binding domain 93 135 IPR003340 GO:0003677
Tsu01g03345 135 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 93 135 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu01g03345 135 ProSiteProfiles B3 DNA-binding domain profile. 63 135 IPR003340 GO:0003677
Tsu01g03345 135 PANTHER AUXIN RESPONSE FACTOR 6 93 135 - -
Tsu01g03345 135 Gene3D - 61 135 IPR015300 -
Tsu01g03345 135 SUPERFAMILY DNA-binding pseudobarrel domain 91 134 IPR015300 -
Tsu01g03345 135 CDD B3_DNA 90 128 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03345 Tsu-Chr1 41406870 41410479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03345 94 135 B3 DNA Binding Superfamily AT1G30330 97.619 3.70e-23 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g03345 B3 4.9e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03345 - - lang:109356722 90.8929