Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03342 ATGCAAACTCATTTGTTTCTCTTCTTCTATTGTTACATTTGTGTGTCTCTTTTTTTCATTGAGGGAGCTGAGATTACAACATATGATGAATTCTCAACTCTTCTCTCAATCAAATCAAGTCTCATTGATCCAATGAATCATCTCAAGGATTGGCAGCCACCGAGTAATGCGACGCGGTGGCAAAGTCAGCTCCATTGTAACTGGACTGGAATTGGTTGTAACTCTAAAGGCTTTGTAGAGAGTTTTGAACTCTATAACATGAACGTAAGTGGTATTGTTTCAAACCAAATTCAATCCCTTTCAAGTTTGTCTTATTTCAATATAAGTTGTAATAATTTTGCTTCAACACTTCCAAAATCACTTTCAAACCTTACTTCTCTAAAAAGCTTTGATGtgagtcaaaactacttcacTGGCAGCTTTCCCACCAGTTTCGGAAGAGCTGCAGAGTTGAGATCAATCAATGCATCAAGCAATGATTTTTCAGGTCTTCTTCCTGAGGATATTGGAAATGCAACATTCCTCGAAAGCCTCGATTTTCGAGGAAACTACTTTGTAAGTCCAATTCCAAAGAGTTttaaaaatttgcaaaatctaAAATTTCTAGGCCTTTCAGGCAATAACTTCACAGGGAAGATTCCAGAATATCTTGGTGAGCTCAGTTCTTTAGAGACATTGATTATGGGATACAATGAGTTTGAAGGTGAGATTCCTGCAGAATTTGGCAACATGACAAATCTTCAATATCTTGATTTAGCAGTAGGAACTCTCAGTGGTCAAATTCCACCTGAATTAGGTAAGTTAAATAAACTAACTACAATTTACTTATACCGAAACAAATTCACCACAAAAATTCCGCCTCAACTTGGTAACATTATGTCACTAGAATTTCTAGACCTCTCTGACAATCAGCTCACGGGCGAAATACCAGAAGAACTCACGAAATTGGAAAACCTGCAGCTTTTGAATTTGATGACCAATAAACTAACAGGTCATGTACCTGAGAAGCTTGGTGAATTGAAAAACTTAAAGGTTCTTGAGTTATGGAAAAATTCTTTAGAAGGTTCTTTGCCATTGAACCTTGGAAGAAATTCTCCTTTGCAGTGGTTAGATGTGTCCTCTAACTCATTGTCTGGTGAGATTCCTCCAGGTTTGTGTACAACAGGCAATCTCACTAAACTAATTCTCTTCAACAATTCATTCTCCGGTCCAATTCCAAGTGGACTTTCAAATTGTTCGTCGTTGGTGCGTGTTCGGATTCAAAACAATCTTATTTCCGGAACTATTCCAGTTGGATTCGGAAATCTTCAAAGCCTTCAACGGCTAGAGTTGGCGAAGAACAACCTCACTGGACAAATTCCTATTGATGTTACCTCTTCCACATCACTTTCCTTCATTGATGTATCTTGGAACCACCTCGAGTCATCTTTACCTTCAGAAATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCACAACAGCTTTGGAGGAACTATCCCAGATGATTTCCAAGGTTGTCCATCTCTCTCTGTGCTTGATCTTTCAAATGCAAATATCTCCGGTCCAATCCCGGAAAGTATAGCTTCTTGTCAAAAATTAGTCAACCTTAACTTTAGAAACAATCATTTGACTGGTGGAATACCAAAATCAATCACAAACATGCCAACCTTATCAGTTCTTGATCTGTCCAACAATTCACTGACCGGTCGGATACCTGAAAACTTCGGAAGCTCCCCAGCTCTCGAAACAATGAACCTGTCCTATAACAAACTGGAAGGGCCAGTACCCTCAAATGGGATTCTACTGACCATGAATCCTAATGATTTTATCGGCAATGCCGGTCTTTGCGGAGGCATTCTCCCTCCATGTTCTCATAGTTTGACCGCGACAAGCCACAAAAGAAGCTCACACATTGGCCACATTGTTATTGGTTTTTTGACCGGCATTATGGTTATTTTATCTCTTGGTGCCGCATATTTTGGAGGCAAATGGTTATACAATAGATGTTATTTGTGTAACAGCTCCATCCATGATTGGTTCAAACATAACCACGAAGATTGGCCTTGGAGGTTAGTAGCATTCCAAAGGATCAGTTTCACAAGTAGTGAGATACTAACTTGCATAAAGGAATCAAATGTCATAGGCATGGGTGGTGCTGGTATTGTTTACAAAGCTGAAATCCATAAACCTCAGATAACAGTAGCAGTGAAGAAACTATGGAGGTCAAGCACAGACATAGAAAATGGTGGGAATGATGTACTTAGAGAAGTGGAACTTCTGGGAAGATTGAGGCATAGGAATATTGTGAGGCTATTAGGGTATGTTCACAATGAAAGGGATGTGATAATGGTTTATGAGTACATGCCTAATGGAAACCTTGGAACAGCACTGCATGGTGAACAATCTGCAAGGTTGCTTGTAGATTGGGTCTCAAGGTATAACATAGCTCTTGGAGTCGCACAAGGGATGAACTACCTACACCATGATTGTCATCCATCAGTTATTCACAGGGATATCAAGTCTAACAACATACTCCTCACTACAACATTTGGTTGCCTTGACGCGAATTTGGAGGCAAGAATAGCAGATTTCGGGTTGGCCAGGATGATGATTCAAAAGAATGAGACTGTTACAATGGTGGCTGGATCTTATGGTTATATTGCACCAGaaTATGGATACACTCTGAAGGTTGATGAGAAGATTGACATATACAGTTATGGAGTGGTACTTTTGGAGCTGCTAACTGGTAAAATGCCATTAGACCCTACATTTGAAGAAGCTGTGGACATAGTTGAATGGATACAAAAGAAGAGAAACAACAAAGCATTGTTAGAAGCACTAGATCCCACAATAGCTGGTCAGTGCAAACATGTTCAAGAAGAGATGCTTCTTGTTCTTCGGATTGCACTTCTATGTACCGCAAAGCTTCCCAAGGAAAGACCATCCATGAGAGACATCATCACAATGCTTGGAGAAGCAAAGCCAAGAAGGAAAAGCATTTGCGGTAATGGTAGACAAGAGAGTAGCATGGAAAAGGGAACAATCTTTACCACATCCCCAGTAGCAAGTCTTTTGTAG 3084 0.3949 MQTHLFLFFYCYICVSLFFIEGAEITTYDEFSTLLSIKSSLIDPMNHLKDWQPPSNATRWQSQLHCNWTGIGCNSKGFVESFELYNMNVSGIVSNQIQSLSSLSYFNISCNNFASTLPKSLSNLTSLKSFDVSQNYFTGSFPTSFGRAAELRSINASSNDFSGLLPEDIGNATFLESLDFRGNYFVSPIPKSFKNLQNLKFLGLSGNNFTGKIPEYLGELSSLETLIMGYNEFEGEIPAEFGNMTNLQYLDLAVGTLSGQIPPELGKLNKLTTIYLYRNKFTTKIPPQLGNIMSLEFLDLSDNQLTGEIPEELTKLENLQLLNLMTNKLTGHVPEKLGELKNLKVLELWKNSLEGSLPLNLGRNSPLQWLDVSSNSLSGEIPPGLCTTGNLTKLILFNNSFSGPIPSGLSNCSSLVRVRIQNNLISGTIPVGFGNLQSLQRLELAKNNLTGQIPIDVTSSTSLSFIDVSWNHLESSLPSEILSIPTLQTFIASHNSFGGTIPDDFQGCPSLSVLDLSNANISGPIPESIASCQKLVNLNFRNNHLTGGIPKSITNMPTLSVLDLSNNSLTGRIPENFGSSPALETMNLSYNKLEGPVPSNGILLTMNPNDFIGNAGLCGGILPPCSHSLTATSHKRSSHIGHIVIGFLTGIMVILSLGAAYFGGKWLYNRCYLCNSSIHDWFKHNHEDWPWRLVAFQRISFTSSEILTCIKESNVIGMGGAGIVYKAEIHKPQITVAVKKLWRSSTDIENGGNDVLREVELLGRLRHRNIVRLLGYVHNERDVIMVYEYMPNGNLGTALHGEQSARLLVDWVSRYNIALGVAQGMNYLHHDCHPSVIHRDIKSNNILLTTTFGCLDANLEARIADFGLARMMIQKNETVTMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPTFEEAVDIVEWIQKKRNNKALLEALDPTIAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDIITMLGEAKPRRKSICGNGRQESSMEKGTIFTTSPVASLL 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03342 1027 SUPERFAMILY L domain-like 62 357 - -
Tsu01g03342 1027 Gene3D Phosphorylase Kinase; domain 1 709 793 - -
Tsu01g03342 1027 SUPERFAMILY RNI-like 258 599 - -
Tsu01g03342 1027 SMART serkin_6 710 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03342 1027 ProSiteProfiles Protein kinase domain profile. 710 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03342 1027 Pfam Leucine Rich Repeat 294 316 IPR001611 GO:0005515
Tsu01g03342 1027 SMART LRR_typ_2 196 220 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 100 124 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 436 460 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 340 364 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 294 316 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 556 580 IPR003591 -
Tsu01g03342 1027 SMART LRR_typ_2 268 292 IPR003591 -
Tsu01g03342 1027 Pfam Protein kinase domain 712 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g03342 1027 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Tsu01g03342 1027 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Tsu01g03342 1027 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Tsu01g03342 1027 Pfam Leucine rich repeat 175 232 IPR001611 GO:0005515
Tsu01g03342 1027 Gene3D Ribonuclease Inhibitor 363 629 IPR032675 -
Tsu01g03342 1027 PRINTS Leucine-rich repeat signature 295 308 - -
Tsu01g03342 1027 PRINTS Leucine-rich repeat signature 556 569 - -
Tsu01g03342 1027 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 6 1009 - -
Tsu01g03342 1027 ProSiteProfiles Leucine-rich repeat profile. 294 317 IPR001611 GO:0005515
Tsu01g03342 1027 Gene3D Transferase(Phosphotransferase) domain 1 794 1014 - -
Tsu01g03342 1027 Gene3D Ribonuclease Inhibitor 29 150 IPR032675 -
Tsu01g03342 1027 SUPERFAMILY Protein kinase-like (PK-like) 703 992 IPR011009 -
Tsu01g03342 1027 Gene3D Ribonuclease Inhibitor 260 360 IPR032675 -
Tsu01g03342 1027 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Tsu01g03342 1027 Pfam Leucine rich repeat N-terminal domain 29 74 IPR013210 -
Tsu01g03342 1027 PANTHER UNNAMED PRODUCT 6 1009 - -
Tsu01g03342 1027 Gene3D Ribonuclease Inhibitor 157 259 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03342 Tsu-Chr1 41382747 41389150 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03342 4 1027 Receptor kinase-like Gene Family AT1G08590 61.827 0.0 1257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu01g03342 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03342 - - gmx:100793873 1668.67