Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03340 ATGGAGGGAATAACTGAGGATGAAGTGTTGGATGTTGAGAGTGCTTCTGGTGGTTCTGCAAATGATGACTCAGATGGTGAGGGATCTTTACCTTCTGAAATTGATGACAAATTGCATCTCGAGGAACCTCTAACTGAGGCGGAGATAGAAGACCTTATTTCTGAGCTATTAGAAGTGGAGAGTAAGGCTGCGGAAGCCCAAGAAACTCTTGAAGAAGAGTCTCTTGCTAAAGTGGAGAGTGAAGTTAGACAAGAACTGCAGCAAACGCTACAGGGGAATGATCTGGAAAATGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTCCCAAGTCTTTATAAGTTGATCGAAAGAGATGCTCCAAATGGTTGTTGTACTGAAGCATGGAAAAAGCGAAATCATTGGGTTGGGTCTCAGGCAACTACTGAAATTGCTACATCAGTTTCTGATGCTGAGAAATATCTACAAATAAACAGACCTGTTAGAAGGCGACATGGCAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAGAAAATTTCTCCCGAAACTCTGGAACCTGGGAAAAAAGAAACAGAGGGGGACTGGGATgtgttcaataaaataatttctgaTGGAAGTGGCACTGGTGCTTCATTTGGTAGTAAGACTTGGGCTTCTGTTTATTTAGCCAGCACTCCACAGCAAGCTGCCTTAATGGGACTTGAATTTCCTGGAGTTAACGAGgtggaggaaattgatgatgttgatgacaATTCTACTGATCCTTTTGTCGCAGCAGCCGTTGCAAATGAAAGAGAATTGGATCTTTCCGAGGAGCAAAGTAGACATTTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAAGAAGCTTCAAATACGTTTGAAACACAGGAGGCATCATAAGAAAAGTAAACAGCGAGAAACAAGCACACCTATCCTGTCGATGGAGTCTGTTGATCAATTTAACCCTGATACGAATGAAGGAGCTAGAGTTGAAGGGGACATTGTGTCTGACAATAACAAGGCTGCATGTTTGAATATGGAGGCcgataaaattaacggttttGATGCCAGTTTTCATCTTGACAAAGAAAATCCTATGGGAGATGGTAATTTGTCAGATCCTCCCAAATCTTCATCGGGTGATGTTATTGAACAGAGAGGAACCAAGCGTCTAAATGATGACAATGATATACCCGCTTCCAGTTCTGATAGTAGCGATTCAGATGATTCAGACGATTCAGACGATTCAGATGATTCAGATGTTTCAGAGATAAATGTTACAATAAGcACTAAACGAAGACGCAAAAAGAAGATTAGGAGGATACTTGATGACACAGAATTAGGAGAAGAGACAAAAAAGAAGATAGCAATTGAAAAGGAACGTCAAGAACGCCTGAAGTCTTTGCGAGGGCAGTTTTCTGCTTCATCATTTGACAATAGTTCGGCTGGCTGTAATGGGAGTTCATCTGAAGGTGCAAGCGTTGAAATTCTTGGTGATGCGCTGGCAGGTTATATAGTGAATGTTGTGAGAgagaaaggtgaagaagcagttAGAATACCTCCGAGCCTTTCAGCAAAGCTGAAAACTCATCAGATTGCTGGAATAAGGTTCATGTGGGAAAATATAATACAGTCAATCAGAACAGTTAAGTCTGGAGATAGAGGTCTAGGGTGTATTCTAGCTCATACCATGGGCCTTGGTAAAACATTTCAGGTAATAGCTTTCTTGTATACGGCGATGAGAACTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACATAATTGGCGGACGGAGTTCCTCAAATGGGCACCATCAGAATTAAAGCAACTCAAGGTCTACATGCTGGATGATGTATCAAGAGATAGGAGGGCACAATTGCTCGCTAAATGGAGAGCGAAAGGTGGCGTATTCTTAATTGGCTATGCTGCTTTCCGGAATCTGTCTTTTGGAAAAAACGTGAAAGATCGGGAGACGGCCAGGGAAATTTGCCATGCTTTGCAgGATGGCCCCGACATTCTTGTGTGTGACGAAGCCcatatcattaaaaatactAATGCCGATGTTACTCATGCCTTGAAACAAGTAAAGTGCCAGAGAAGAATTGCGCTTACAGGATCACCTCTTCAAAACAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAGAATGGTCAACACACTAATTCCACCCTGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGATATGAATGTTGTGAAGAAGGACCTACCGCCCAAAACTGTTTTTGTGATAACAGTCAAGCTTTCTCCCCTACAAAGAAAATTGTACAAGAGATTCCTTGACGTGCATGGGTTCACTAATGTCAAggaaaatcatgaaaaattaagaaagagGAGTTTTTTTGCTGGATATCAGGCATTGGCTCGGATATGGAACCACCCTGGGATCTTGCAATTGACAAAAGAAGACAAGGACTGTGTAAGACCTGAAGATGCTGTTGAGAATTTCCTTGTTGATGATATCTTAAGTGACGAAAATTCCGATTCTAATGTGCTTGCTGGAGAGAAATTGAAGTATACAAATGATTTGATGCAAAGGAAGGATGGTAATGGCTATTTCATAAAGGGCTGGTGGAAAGATATTCTTcatgaaaaaatttataaagagcTCGATCAAAGTGGCAAAATGGTTTTGCTAATTGATATACTTACCATGAGTTCTAACGTGGGTGACAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTAGACCTCATAGAACTTTATCTCTCAAAGTTACCACGACGTGGCAAACGAGAAAAGCTGTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCAGAAAGGCAGAAGCTTGTTGAGAGATTCAATGAGCCTTCAAATAAAAGGGTAAAATGCACACTAATTTCGACGAGAGCAGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACAATGGAAGAGAAAATATATAAGCGCCAGGTTACAAAAGAGGGGCTTGCTGCTAGAGTGGTCGATAGACAACAGGTGCATAGGACCATATCTAAAGAAGAAATGCTGCATCTCTTTGAGTTTGGCGATGACGAGAATCCAGAGACTTTGGCTGAACTAAGTAAATATGATGGCCTTACTTCTGAACCAAATAATCCGATTTTGGCTGGGGATTCGCTGAAACATACATTACCACATTCAAATGGAAGCAGTTATTCGGATAAGTTGATGGAAAGCTTACTAGGCAAACATCATCCCCGGTGGATTGCCAATTATCATTTACATGAATCCTTGTTACAAGAAAACGAAGAGGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGCAAATCGTTGGAATGGGAAGAAGTTCAGAGAGTACCGATTGGTGAGACTGTGCCTGAACAAAAGCCAGAAGAGTCAAAGGCAGAAGAACCCCAAGAATCACAAAAGTGGACCTTATCAACTAAGCTGAAAAACCGTTTCACAAAGCGGCAATGCACCAACCTAGCGCACTTGCTGACACTTAGAAGCCAAGGAATAAAATTTGGGCGCAGTACAGTCTGCGGGGAATGTGCCCGGCCGATAAGGTGGGAAGACTTGAAGATTAAATAG 3969 0.4026 MEGITEDEVLDVESASGGSANDDSDGEGSLPSEIDDKLHLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVESEVRQELQQTLQGNDLENAVADEMATFKEEWEAVLDDLETESSHLLEQLDGAGIELPSLYKLIERDAPNGCCTEAWKKRNHWVGSQATTEIATSVSDAEKYLQINRPVRRRHGKLLEEGASGFLQKKISPETLEPGKKETEGDWDVFNKIISDGSGTGASFGSKTWASVYLASTPQQAALMGLEFPGVNEVEEIDDVDDNSTDPFVAAAVANERELDLSEEQSRHFKKVKEEDDAIVDKKLQIRLKHRRHHKKSKQRETSTPILSMESVDQFNPDTNEGARVEGDIVSDNNKAACLNMEADKINGFDASFHLDKENPMGDGNLSDPPKSSSGDVIEQRGTKRLNDDNDIPASSSDSSDSDDSDDSDDSDDSDVSEINVTISTKRRRKKKIRRILDDTELGEETKKKIAIEKERQERLKSLRGQFSASSFDNSSAGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSLSAKLKTHQIAGIRFMWENIIQSIRTVKSGDRGLGCILAHTMGLGKTFQVIAFLYTAMRTVDLGLRTALIVTPVNVLHNWRTEFLKWAPSELKQLKVYMLDDVSRDRRAQLLAKWRAKGGVFLIGYAAFRNLSFGKNVKDRETAREICHALQDGPDILVCDEAHIIKNTNADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKRFLDVHGFTNVKENHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKDCVRPEDAVENFLVDDILSDENSDSNVLAGEKLKYTNDLMQRKDGNGYFIKGWWKDILHEKIYKELDQSGKMVLLIDILTMSSNVGDKVLVFSQSIPTLDLIELYLSKLPRRGKREKLWKKGKDWYRLDGRTESSERQKLVERFNEPSNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLAELSKYDGLTSEPNNPILAGDSLKHTLPHSNGSSYSDKLMESLLGKHHPRWIANYHLHESLLQENEEEKLSKEEQDMAWEVYRKSLEWEEVQRVPIGETVPEQKPEESKAEEPQESQKWTLSTKLKNRFTKRQCTNLAHLLTLRSQGIKFGRSTVCGECARPIRWEDLKIK 1322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 1 40 - -
Tsu01g03340 1322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 580 763 IPR014001 -
Tsu01g03340 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 812 IPR027417 -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 1251 1265 - -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 324 364 - -
Tsu01g03340 1322 SMART helicmild6 990 1087 IPR001650 -
Tsu01g03340 1322 PANTHER RAD54-LIKE 418 1319 IPR044574 GO:0016887
Tsu01g03340 1322 PANTHER RAD54-LIKE 32 362 IPR044574 GO:0016887
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 402 416 - -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 338 354 - -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 1246 1270 - -
Tsu01g03340 1322 Gene3D - 823 1164 IPR027417 -
Tsu01g03340 1322 SMART ultradead3 554 775 IPR014001 -
Tsu01g03340 1322 Coils Coil 107 127 - -
Tsu01g03340 1322 Gene3D - 531 812 IPR038718 -
Tsu01g03340 1322 PANTHER RAD54-LIKE 418 1319 - -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 436 452 - -
Tsu01g03340 1322 PANTHER RAD54-LIKE 32 362 - -
Tsu01g03340 1322 Pfam SNF2-related domain 579 882 IPR000330 GO:0005524|GO:0140658
Tsu01g03340 1322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 967 1135 IPR001650 -
Tsu01g03340 1322 CDD SF2_C_SNF 955 1098 - -
Tsu01g03340 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 818 1153 IPR027417 -
Tsu01g03340 1322 MobiDBLite consensus disorder prediction 390 457 - -
Tsu01g03340 1322 Coils Coil 49 76 - -
Tsu01g03340 1322 Pfam Helicase conserved C-terminal domain 962 1087 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03340 Tsu-Chr1 41341110 41362775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03340 588 1140 RAD5 or RAD16-like Gene Family AT5G43530 23.963 6.93e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g03340 SNF2_N 7.7e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03340 K10779 - egt:105955484 1616.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03340 01 41341110 41362775 Tsu01g03340 01 41341110 41362775 ECH