Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03336 ATGTCTTCATCTTATCCCTCGTCCTCGATGCAGGCTGCATCAATTAATTCCAACATCAGAAGTGTTGGACACATGTTTTCAACCTCTGCTGAACAACTCCCTGATAACGTCTCTTTTTCGTCTGCTTCAGAAATACATTCTACGCCATTCCCTCAAGAAAGTGATGTTCTTTCCTGGGGAACAGATCCGTTTGATGATATTCTTCAGTTTCCTGATGTTCCCATCCAGAATGATCATGTGGATTACAGTGGTTCCGATGTCTTGGGTGGAAATGCCAAAACAACTGATTTCAAGGAGTGGGTTGATCAGTTAATGTCAGTTGATGAATCTCCTCAGCCAAATTGGAATGAACTTCTCAGTGATGACAATATAGCTAATAACAATATAGCAGAACAGGATCAACAAATACAGCCTTCTCCCTTGATGCAAGAGACCCAGGTTTCACTGCAGCAGTATGTACCATCTAAAGAAGTTAATGAGCTTCCTAATTCTTCTGTGTCGACTACATCACAATCTAAGCCTAGAATGCGTTGGACTCCTGAACTTCATGAGGCCTTTGTGGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACACCAAAGGGTGTCTTGAACTTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCATCTGCAgAAATATAGAACTGCCAGATACAAACCAGAACCATCAGAAGGAATTGAAGAGAAGAAGTTGACTTCAGTCGATGAAATGACAAACATAGACTTAAAAACACCTAAGGGAATCACTGAAGCATTGCGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAGCTTGAGATTCAAAGAAATTTACAGATTCAAATTGAGAACCAAGGGAAGCGTCTACAAATGATGTTTGAGCAACAGATCAAGTCGGATGATCCTTCTGCTCCACTATCAAGCGTAGTGGCACCTCCACCAGTTGAAaatttagaaaacaaaaatgaaggTCATGAAAAACTTGGAACCAATGGTAGCACTCCAGCCAACAAGCCTGAAGGAAGTTCCCAAGATACAAGCACAAAGCAAAAGGGAGATGCTGCTAAAGTTACTGATGAACTTGAGCTGGAAGAAGACCAATTTGTCGCACCACCCTCAAAACGAGCGAAGACTGACGACGAGTAA 1164 0.4184 MSSSYPSSSMQAASINSNIRSVGHMFSTSAEQLPDNVSFSSASEIHSTPFPQESDVLSWGTDPFDDILQFPDVPIQNDHVDYSGSDVLGGNAKTTDFKEWVDQLMSVDESPQPNWNELLSDDNIANNNIAEQDQQIQPSPLMQETQVSLQQYVPSKEVNELPNSSVSTTSQSKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGIEEKKLTSVDEMTNIDLKTPKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKSDDPSAPLSSVVAPPPVENLENKNEGHEKLGTNGSTPANKPEGSSQDTSTKQKGDAAKVTDELELEEDQFVAPPSKRAKTDDE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03336 387 Gene3D - 172 231 - -
Tsu01g03336 387 SUPERFAMILY Homeodomain-like 171 227 IPR009057 -
Tsu01g03336 387 MobiDBLite consensus disorder prediction 358 387 - -
Tsu01g03336 387 Pfam Myb-like DNA-binding domain 175 226 IPR001005 -
Tsu01g03336 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 6 384 IPR044848 GO:0003700
Tsu01g03336 387 Coils Coil 261 281 - -
Tsu01g03336 387 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 173 227 IPR006447 GO:0003677
Tsu01g03336 387 MobiDBLite consensus disorder prediction 305 387 - -
Tsu01g03336 387 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 6 384 - -
Tsu01g03336 387 MobiDBLite consensus disorder prediction 333 357 - -
Tsu01g03336 387 Pfam MYB-CC type transfactor, LHEQLE motif 260 304 IPR025756 -
Tsu01g03336 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 230 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03336 Tsu-Chr1 41305238 41308224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03336 17 302 G2-like Transcription Factor Family AT4G28610 48.693 3.93e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g03336 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03336 - - mtr:MTR_1g080330 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03336 01 41305238 41308224 Tsu01g03336 01 41305238 41308224 ECH
Tsu07g03726 07 43477103 43483830 Tsu01g03336 01 41305238 41308224 PCT
Tsu07g04603 07 50660563 50665214 Tsu01g03336 01 41305238 41308224 PCT