Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03326 ATGTCTACCCATTTCGATATGTTGTCTGATGTTCTTCCTGGGTGTGATTCATGGAAATTCAAGGTCCGCGTTCTTCGTCTTTGGTCAATTAACTCCTTTATGAGGCCAAATGAGATCAATTCTTTGGAAATGGTTCTCATAGACGATAAGATGAAATTGAAGGAAGGGGAAGTTTATAAGTTGTCAAATGTTGTTGTCGCTCCTGCTATTGGAGGTTACCGTCCAACTCTTCATCCCCACAAGTTGAATTTTCAGATGAAGACCACAGTTCAGGCTTGTGAAGATGCTGATATCTCTTCGTCTGGATTTTCCTTCACTGATCTTGCTGAAGTGTCTGGCTTCTCATCTGATTATCATTACTTAATAGtAGATGTCATTGGTGTAATCTCTGGTATATCAGATGAGAGGGAGTATCTTCCCGATGGTAAAGTAACCAAGATGGTTGTTCTTGAACTCACAGATAATGGGCGTGAATGTGCTTTCTTTGGTGaatatgttgatgattttcaaAGCTTAATTGGCAAATCTCCATCTTGTTTTCACGTTGTTGCAATACAGTTTGCTAAGATTAAAATATTCAGAGGATTTCTTTCAATTCGAGGACGATTTCCTTATGTCAAACTgcagagaagaaaaaaaagtattgagGAAATTGTTTCTTTGAATGAGAATGGAGTGTTTGTTGTATGTGCTACAATTGAAAGTTTGGGTGATGGTGAAAATTGGTGGTATCATGCTTGCAAGTGCCATAAGGGTGTTACTGCTGATTCCGATGCTTATTATTGTATTGGCTGTGATAAGCATGTGTATGTTACTGTTCCGAGGTACCGAGTTAAGGTTAATGTCAGTGATGGTGATGCAAGTGCTGTTTTTGTGATGTTTGATGGGGATATGCAATATCTAATCGAGAAACAATCTGATAAGGACGTGGAAATCATAGAACTCTCTGAAGCCGTAAAATTCGCAGAAGAAGTGCTAGTGACTCCCAAATGCGTGATAATTGATCACATTATTGCTGATTGCTCATATTTTGTGAAGCTTGGAGATGACATTGACGGCGATCTCCATGTTGGAATGTCAGCTGCTAAACGTAAAAGGACAAGAAAAAGTGTTGCCAAATCTTTTAACCTGAATGATGACTTTGATGAAGAAATCCCACATGAAATTGTTGGAACATCGAGTGTTGTCAAGGAGAAGAAAGGCTGA 1206 0.3781 MSTHFDMLSDVLPGCDSWKFKVRVLRLWSINSFMRPNEINSLEMVLIDDKMKLKEGEVYKLSNVVVAPAIGGYRPTLHPHKLNFQMKTTVQACEDADISSSGFSFTDLAEVSGFSSDYHYLIVDVIGVISGISDEREYLPDGKVTKMVVLELTDNGRECAFFGEYVDDFQSLIGKSPSCFHVVAIQFAKIKIFRGFLSIRGRFPYVKLQRRKKSIEEIVSLNENGVFVVCATIESLGDGENWWYHACKCHKGVTADSDAYYCIGCDKHVYVTVPRYRVKVNVSDGDASAVFVMFDGDMQYLIEKQSDKDVEIIELSEAVKFAEEVLVTPKCVIIDHIIADCSYFVKLGDDIDGDLHVGMSAAKRKRTRKSVAKSFNLNDDFDEEIPHEIVGTSSVVKEKKG 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03326 401 Pfam Replication factor-A C terminal domain 227 310 IPR013955 -
Tsu01g03326 401 CDD RPA1_DBD_C 215 317 IPR013955 -
Tsu01g03326 401 SUPERFAMILY Nucleic acid-binding proteins 5 97 IPR012340 -
Tsu01g03326 401 Gene3D - 206 326 IPR012340 -
Tsu01g03326 401 Gene3D - 49 96 IPR012340 -
Tsu01g03326 401 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 15 304 - -
Tsu01g03326 401 Pfam Domain of unknown function DUF223 48 95 IPR003871 -
Tsu01g03326 401 PANTHER REPLICATION FACTOR A 1, RFA1 15 304 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g03326 401 SUPERFAMILY Nucleic acid-binding proteins 213 315 IPR012340 -
Tsu01g03326 401 SUPERFAMILY Nucleic acid-binding proteins 103 201 IPR012340 -
Tsu01g03326 401 CDD RPA1_DBD_A_like 21 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03326 Tsu-Chr1 41178432 41180782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03326 56 195 Core DNA Replication Machinery Family AT2G06510 28.378 9.34e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03326 - - mtr:MTR_8g062030 278.485