Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03324 atgGGTGTGGCAAGTAATGTTGGAGCTTATCGTACTACGCACCACCCTTATAAGCTTAACTTTCAGTTTAGCTCTTTGGTTCAAAGGCTTTCGAATTTTCAGATCGTTAGATCTTCATTTGCCTTTGTTCCAATTTTTGAAGTTGTTGGTGGCAATTATGACACTTATTTCTTAGTTGGTGAGTTAGATTATCCattgCATAAGCCGCAGTGTACTCTTTTTGGACAATATGTTGATGAACTTAATACCTTTATTGGAGCTGGTGATGTTAACAATGCTGTAGTAATTGTTCAGTTTGCTAAAGCAAAGACTTTTCAAGACAAAATTCATATCCAGAACTGCATGAATTgctctgttttgatttttaaccCAACATGTCCAGAAAGTGTTAACTTAAGGGCAAGtctCATTGATGCTGTTGAGACTCTTTCTCCAATGCCCTTAACTCAATTCAATGCTGAAGTAAGAGTTCAACCAATTGATGAGTTTTTGTACAATACTCCAAGGATCACCTTGCAAGGTCTCAAAGAAGCTACAAGTGAATCATTGAATGTGGTTGTTGCTACTGTGAAAAGGATTTTAAATCCGGATAGTTATTATTATACTGCATGTATGTGTAGTAAGGCTGTCATACCAGATTCGCGGATGTTTTATTGCGAAAAGTGTAATAAGCATGTTCAAAAAGTTGTTCCGAgGTTTTGCATCAAAGTTAGAGTAATTGATCATACTGATTCTGCCACTTTAGTGATATTTGATAAAGAAGCAAGTTTGATATTCAATATGTCTTGTGCCGACATGATTCAAGTAGTTGATCTTGCTGTTGGTGTTGGAATTGTGTCACCTCTACTTGAGGGTTTGGTTGAAAAAACTTGGTTGTTTAAGGAGGGTGGATCTTTGAGTACTTTCTTGAATAAAGGAAAGAATATTTATGTTGGGGGATCCTCTAATGTGTTATCTGAGGACTATGGAAGTTTGTCTGGTCAATCTCACAAAGGAAATGACTTGATTATTGAGGGAACACATGTTGGAGTTTCCCAAGATTTGATGCTGAAATTTTCATCTGCTGTTGTTAATCTTGCTGATGGTGATAATATTGAGCCTGTTTTTGAGGTAGAAAGCGGTTCAGCTGAGGTGCAAAGGATTACTGCTGTTTCTGGTGAAAAGAAAACAACCACTGATTTAGCTGAGGTGAGTTTAACACCTTCAACTTCAGTTAAGCCTCCTACTGGTGGACGGAAGAAATCAGCTGTTAAGAGAGTATCACCTCAGCATGAAGacaatgatgaagatgaaaatgCTCCTATGAAGTTGTTGAAGAGGACTGTAAAGATTGAAAAGATACCCTAG 1347 0.3615 MGVASNVGAYRTTHHPYKLNFQFSSLVQRLSNFQIVRSSFAFVPIFEVVGGNYDTYFLVGELDYPLHKPQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCMNCSVLIFNPTCPESVNLRASLIDAVETLSPMPLTQFNAEVRVQPIDEFLYNTPRITLQGLKEATSESLNVVVATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCIKVRVIDHTDSATLVIFDKEASLIFNMSCADMIQVVDLAVGVGIVSPLLEGLVEKTWLFKEGGSLSTFLNKGKNIYVGGSSNVLSEDYGSLSGQSHKGNDLIIEGTHVGVSQDLMLKFSSAVVNLADGDNIEPVFEVESGSAEVQRITAVSGEKKTTTDLAEVSLTPSTSVKPPTGGRKKSAVKRVSPQHEDNDEDENAPMKLLKRTVKIEKIP 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03324 448 MobiDBLite consensus disorder prediction 400 437 - -
Tsu01g03324 448 Pfam Replication factor-A C terminal domain 187 268 IPR013955 -
Tsu01g03324 448 Gene3D - 63 143 IPR012340 -
Tsu01g03324 448 Gene3D - 162 310 IPR012340 -
Tsu01g03324 448 CDD RPA1_DBD_C 175 294 IPR013955 -
Tsu01g03324 448 SUPERFAMILY Nucleic acid-binding proteins 176 302 IPR012340 -
Tsu01g03324 448 PANTHER REPLICATION FACTOR A 1, RFA1 4 267 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g03324 448 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 4 267 - -
Tsu01g03324 448 MobiDBLite consensus disorder prediction 418 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03324 Tsu-Chr1 41150996 41153409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03324 10 291 Core DNA Replication Machinery Family AT5G08020 25.155 5.56e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03324 - - mtr:MTR_3g056270 361.688