Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03313 ATGGCGAATCGGTGGTGGACCGGACCGGTAGGTCTAGGTGGGATGGACAATTCAGTAACTTCCTCCCCACTTCAAAAACCAGATCTGGGTTTCTCCATGAATGGAAGTGCCATTACAGGAGGATTgaacaacaataataacaacaacaacgaAGATCAAGATGAGAAAGAAAATAGCGACGAACAAAAAGGAGGAGGAATCGAAACAAATACTTCGACGCGCCGTCCAAGAGGACGACCATCAGGAtcaaaaaacaaaccaaaaccaccAATATTCATAACAAGAGATAGCCCTAATGCACTTCGAAGTCACGTAATGGAAGTAGCAACAGGAACAGACATATCAGATTGTGTTATTCAGTTTGCTAGAAAAAGACAGAGAGGTATTTGCATTCTAAGCGCAAGTGGAACCGTCGTTAACGTTTCTCTCCGGCAACCTACAGGTCCTGGAGCTGTGGTGGCTCTTCCTGGTAGATTTGATATTCTATCGTTAACTGGTTCTGTTCTTCCTGGTCCTTCACCTCCTGGTGCTACTGGTTTGACTATTTATCTTTCTGGAGGTCAGGGACAGGTGGTTGGCGGTGGTGTTGTTGGTCCGCTGGTGGCTGCTGGACCGGTTATGTTGATGGCGGCGACTTTTTCGAATGCAACATATGAGAGGTTGCCtgttgaagatggtgatgatcAGGAGCAGGGAcagggtggtggtggtggtggcggtGACGATGAGTCTCCGACTGCGGCGGGGATGGGACAGTTACCGGGTGGATCTGTCGGAGAAGGTTCATCGGTTTATAATAATTTGGGTGTTACAAATGGAGGACAACAACAACAGTTGTTGAATAATCATGAAGCTTATAATAATTCTCCTTGGAGTCATGGTAGAACACCATACTAA 897 0.4181 MANRWWTGPVGLGGMDNSVTSSPLQKPDLGFSMNGSAITGGLNNNNNNNNEDQDEKENSDEQKGGGIETNTSTRRPRGRPSGSKNKPKPPIFITRDSPNALRSHVMEVATGTDISDCVIQFARKRQRGICILSASGTVVNVSLRQPTGPGAVVALPGRFDILSLTGSVLPGPSPPGATGLTIYLSGGQGQVVGGGVVGPLVAAGPVMLMAATFSNATYERLPVEDGDDQEQGQGGGGGGGDDESPTAAGMGQLPGGSVGEGSSVYNNLGVTNGGQQQQLLNNHEAYNNSPWSHGRTPY 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03313 298 MobiDBLite consensus disorder prediction 14 29 - -
Tsu01g03313 298 PIRSF ESCAROLA 15 298 IPR014476 GO:0003680
Tsu01g03313 298 MobiDBLite consensus disorder prediction 224 298 - -
Tsu01g03313 298 MobiDBLite consensus disorder prediction 259 298 - -
Tsu01g03313 298 ProSiteProfiles PPC domain profile profile. 98 233 IPR005175 -
Tsu01g03313 298 MobiDBLite consensus disorder prediction 64 78 - -
Tsu01g03313 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 8 298 - -
Tsu01g03313 298 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 298 IPR014476 GO:0003680
Tsu01g03313 298 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 215 IPR005175 -
Tsu01g03313 298 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 225 - -
Tsu01g03313 298 Coils Coil 42 62 - -
Tsu01g03313 298 Gene3D - 101 230 - -
Tsu01g03313 298 CDD DUF296 102 185 IPR005175 -
Tsu01g03313 298 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03313 Tsu-Chr1 40990511 40991573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03313 1 223 AT-hook Motif Nuclear Localized (AHL) Family AT3G04570 60.996 1.41e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03313 - - qsu:112038015 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03313 01 40990511 40991573 Tsu01g03313 01 40990511 40991573 ECH