Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03308 ATGGAAGActccaccaacaacaacaaccaagtGACCTCATTGTTCGAACATCACAACAACTTAAACACCGTCACCGTTAATCTCTCTCCAGTTAACGGTTCCGTTGTTGATGGGACCCACACCGACCTTCATTCCGTTACGGAGAACAAGAAGAAGCGTGGTAGGCCGAGAAAGTATGAGTCTCCTGAAGAAGCTCTCGCCGGTAGAAAAGCTATCGCCGCTAGGAAAGCTGCCGCCGCCGCTGCTGCTGCCGCTGCTGCTGCTTCCGCTACGACGTCGTTTTCGTCTTCTGACCATATTAAGCCGAAAAAGTTTCATTCGTCTTCTTCTCTAGGTAATTCTAGAGAGGGATTTAATCTTCACATTGTTGCTGTTCCTGCTGGTGAGGATATTGGCCAACATATTATGTCGCTCATGCAAAAACATAGTAGGTGTGAGATGTGCATTCTGTCTGGATCTGGTTCTATCGCTAGTGCCACTCTTCGTCAGCCAGCAACCTCTGGAGGCAATATTACATATGAgGGTCGCTTTGACATTATTTCACTTACTGGATCCTATGTCCATAATGAATTTGATGGTCGTTCTGGTGGTCTCAGTGTATGCTTATCTCATTCTGATGGGCAACTTGTAGGCGGTAGCATTGCTGGACCCCTTAAAGCTGCTGGTCCAGTTCAGGTCATTGTTGGCACATTTTCTATCAACACTACTGGTATAAAAGGCGATATTTCTACCAGCAAGTTATCATCACCAGTTGCTGAACCAGCATCAAATTTAGGCTTCCGCCCAGCAGTTAACTCTTCCAATGGGAATACAATCCCGGTAAACAAGGAGCATCAAGCCATTGGGGGAGGTCATTTCATGCATCAACAATATGGTGTAAATGTGGTACCTTTCCATCCCTCGGACTGGGGAAGTAGTCCGGATTCAAGAAATGCTGGCTTTGAACTGATAGGAAGAGCAGGTCACGGAGCACATCAGTCTCCTGAGAACGGGGACTATTCCTAA 1005 0.4557 MEDSTNNNNQVTSLFEHHNNLNTVTVNLSPVNGSVVDGTHTDLHSVTENKKKRGRPRKYESPEEALAGRKAIAARKAAAAAAAAAAAASATTSFSSSDHIKPKKFHSSSSLGNSREGFNLHIVAVPAGEDIGQHIMSLMQKHSRCEMCILSGSGSIASATLRQPATSGGNITYEGRFDIISLTGSYVHNEFDGRSGGLSVCLSHSDGQLVGGSIAGPLKAAGPVQVIVGTFSINTTGIKGDISTSKLSSPVAEPASNLGFRPAVNSSNGNTIPVNKEHQAIGGGHFMHQQYGVNVVPFHPSDWGSSPDSRNAGFELIGRAGHGAHQSPENGDYS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03308 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 117 232 - -
Tsu01g03308 334 MobiDBLite consensus disorder prediction 32 64 - -
Tsu01g03308 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 232 IPR005175 -
Tsu01g03308 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 5 329 - -
Tsu01g03308 334 MobiDBLite consensus disorder prediction 43 64 - -
Tsu01g03308 334 Gene3D - 119 245 - -
Tsu01g03308 334 ProSiteProfiles PPC domain profile profile. 114 252 IPR005175 -
Tsu01g03308 334 CDD DUF296 119 231 IPR005175 -
Tsu01g03308 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 5 329 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03308 Tsu-Chr1 40954165 40959396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03308 50 333 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 42.671 4.84e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03308 - - gmx:100809675 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03308 01 40954165 40959396 Tsu01g03308 01 40954165 40959396 ECH