Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03299 ATGAtgaaaaatgaatcaaaagtaaGAAAACCACGTTCAAGAGGAAAAGGAGGACCTGAGAATGCATTATGCAATTATAGAGGAGTGAGGCAGAGAACTTGGGGAAAATGGGTTTCTGAAATAAGAGACCCCAAACATGGTGTTAGGCTTTGGCTAGGAACATTCAATACCTCTATTGAAGCTGCACTTGCATATGATAATGCTGCAAAAAGGCTTTATGGTGAATCTGCTAGGCTCAATTTGGCACCACCACATAACACTCCAACAACAAGTGTAGAGGTTGATCAGAAATTGATTATTCCTACACAATCTAATGATACCAATTGCATTGAAgaaaattctaataataataataataagggtgTGTTATGTGAGACTAATTTGGACCTTGAATTACAAAGTGTTCAATGGAATACTAGTAATTTCATTATGGATGATTTTATGGAATTGAATTATAGTGTACATGATTGGGATCCATCATTACTTGAGATTTAA 495 0.3293 MMKNESKVRKPRSRGKGGPENALCNYRGVRQRTWGKWVSEIRDPKHGVRLWLGTFNTSIEAALAYDNAAKRLYGESARLNLAPPHNTPTTSVEVDQKLIIPTQSNDTNCIEENSNNNNNKGVLCETNLDLELQSVQWNTSNFIMDDFMELNYSVHDWDPSLLEI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03299 164 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Tsu01g03299 164 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Tsu01g03299 164 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Tsu01g03299 164 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Tsu01g03299 164 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 119 - -
Tsu01g03299 164 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 119 - -
Tsu01g03299 164 MobiDBLite consensus disorder prediction 1 16 - -
Tsu01g03299 164 SUPERFAMILY DNA-binding domain 25 81 IPR016177 GO:0003677
Tsu01g03299 164 Gene3D AP2/ERF domain 25 82 IPR036955 GO:0003700|GO:0006355
Tsu01g03299 164 MobiDBLite consensus disorder prediction 1 23 - -
Tsu01g03299 164 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Tsu01g03299 164 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03299 Tsu-Chr1 40893291 40893785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03299 3 84 AP2-EREBP Transcription Factor Family AT5G18450 68.293 8.99e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g03299 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03299 - - mtr:MTR_1g079630 196.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03299 01 40893291 40893785 Tsu01g03299 01 40893291 40893785 ECH