Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03269 ATGGCCAACAATGAAGAACAAACATATGCATTGAAGGATAAGTTGAAGGAACTTGTTAATACTATTGTGGAAAATGATGACTACACTGTACATGCTGCTGATGAAGCTATTACTGCTCTTTCTGTTCTCAGAGATATGAAATGTAGTGCTTCTTTTTCGCGTAAATTGGATCGTTTATCTGTTCCTGTTCCTCCACAGTTTCGATGTCCTATCTCAGGTCATGTTATGACTGATCCTGTTATCTTGGCTAATGGACAGACTTATGATCGACCATTCATCCAAAGATGGCTGAATGAAATCCACAAAACTTGCCCTCAAACTCAGGATGTCCTCTCTCATTCCATCCTTTCTCCTAATTATTTGGTCCATGACATGATTTCAAGGTGGTGTAAGGAGCATGGAATTGAGCTGCCAATGCCTACTGGAGACATCGACAATGGAGAAGTAAACGAAGCGCACAAATTCCGTTTACGTTCGTTACTTCACAAACTGTCATTATCTACGCTGGACCAAAAAGAAGCTGCAAGAGAGCTTCGGCTGTTATCGAAGCGAATGCCTTCGTTTCGAACACTCTTTGGTGACTCAGAAGTGATTCAGAAATTACTCACTCCATTTTCACCTGGCACGGCTTGTATCGATCCCGAACTCCAAGAGGATTTGATCACAGCAGTTCTAAATCTCTCaatagatgaaaaaaataagagagtttTCGCAGAGGATGAAAAGCTTATCGCCTTTATTATCGATTCGTTGAAATCAGGAACCATCCAAACCAGAAGCAATGCTGCAGCAGCTATTTTGTCATTATCAGCAATTGATATCAACAAACACATCATTGGAAAAACTGGTGCTATTAAATATTTGGTTGATCTTTTAGAAAATGGACATCCCTCAGCAATGAAAGATGCTGCTTCGGCTATATTCAATCTATGTATTGCACATGAAAATAAAGCGAGGATTGTTCGAGAAGGTGCAATTCAGGTTATTCTCAGCAAGATCATCATGGACCATGTTCTAGTCGACGAGCTTTTGGCCTTATTGGCACTTCTCTCTAGCCATTCCAAGGCTGTTGAGGCATTGGGAAGTCACGGCGCTGTCCCTTTCCTAATGGATATATTAAGGGATGACAGTGTTTCGGATCGGAGCAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAACGATAAAACAAAGAGGAAGGAAATTAGAGATGATGAAATAGCCAATGGTACATTGTCTAAGCTTTCTCATTGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGCGGTATTCTCGATAGGCTCAAGATAGCTCAATCCCCTCAACGCACGACACTTGAGGGTCTATTTGGTGTCAATTTTAAACAATTATGA 1377 0.4016 MANNEEQTYALKDKLKELVNTIVENDDYTVHAADEAITALSVLRDMKCSASFSRKLDRLSVPVPPQFRCPISGHVMTDPVILANGQTYDRPFIQRWLNEIHKTCPQTQDVLSHSILSPNYLVHDMISRWCKEHGIELPMPTGDIDNGEVNEAHKFRLRSLLHKLSLSTLDQKEAARELRLLSKRMPSFRTLFGDSEVIQKLLTPFSPGTACIDPELQEDLITAVLNLSIDEKNKRVFAEDEKLIAFIIDSLKSGTIQTRSNAAAAILSLSAIDINKHIIGKTGAIKYLVDLLENGHPSAMKDAASAIFNLCIAHENKARIVREGAIQVILSKIIMDHVLVDELLALLALLSSHSKAVEALGSHGAVPFLMDILRDDSVSDRSKENCVAILYIIFFNDKTKRKEIRDDEIANGTLSKLSHCGTSRAKRKACGILDRLKIAQSPQRTTLEGLFGVNFKQL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03269 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 136 IPR013083 -
Tsu01g03269 458 SMART Ubox_2 66 129 IPR003613 GO:0004842|GO:0016567
Tsu01g03269 458 PANTHER U BOX DOMAIN-CONTAINING 5 441 - -
Tsu01g03269 458 Gene3D - 160 448 IPR011989 -
Tsu01g03269 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 283 325 IPR000225 GO:0005515
Tsu01g03269 458 CDD RING-Ubox_PUB 67 109 IPR045210 -
Tsu01g03269 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 441 - -
Tsu01g03269 458 SUPERFAMILY ARM repeat 167 436 IPR016024 -
Tsu01g03269 458 SUPERFAMILY RING/U-box 51 137 - -
Tsu01g03269 458 Pfam U-box domain 63 133 IPR003613 GO:0004842|GO:0016567
Tsu01g03269 458 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842|GO:0016567
Tsu01g03269 458 SMART arm_5 272 312 IPR000225 GO:0005515
Tsu01g03269 458 SMART arm_5 313 352 IPR000225 GO:0005515
Tsu01g03269 458 SMART arm_5 353 395 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03269 Tsu-Chr1 40499839 40501988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03269 125 445 U-box Gene Family AT3G07360 50.765 2.91e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03269 - - gmx:100806132 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03269 01 40499839 40501988 Tsu01g03269 01 40499839 40501988 ECH