Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03247 ATGGAATTTCATCCCATAATTCCCATATCTCAAGGTTCATTGTGGATGATGAAATTGAGACCAAGTGAAACAATGGATTCTGAATCTTATCCACAACGTCCAGGAGAACCAGATTGTTCATATTACATCAAAACTGGCCTTTGTAGATTCGGTGCCACGTGTCGATTTAACCATCCTCCTAATAGAAAGCTGGGTATTGTGTCTGCAAGAACGATTGGCGAGTTCCCGGAAAGAATAGGGCAACCAGAATGTCAGTACTATATGAAGACAGGAACTTGCAAATTTGGAGTCACATGCAAATTTCATCATCCTAGAGACCAAGCTGAGATTTCTGGAAGAGTTGCCTTAAACACTTTAGGCTATCCACTTCGCCCCAATGAAGCTGAATGTAGCTATTATTTGAGAACAGGAGAATGCAAATTTGGTAACACTTGTAAATTCCACCATCCTCAACCAAGTAACATGATGCTTTCTTTAAGGAGTTCTCCTATTTACCCTACTCTTCATTCTCCAAATCCATCCTATCTTCCTTCAAGTTATACACCTTTAATTATTCCTGGATGGAATGCATACAATGGTCAAATGGGATCGATGATCTCTACACCTCCAGCCAGTCCATTGCAGGGGGAGAATATATTTCCAGAGAGACCTGGTCAGCCCGAATGCCAATTCTACATGAAAACCGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCGCGTCAAAGACTACCAATTCCTGCTTCTCCTGACAGTCTCTTGAGTCCCATGGGCCTTCCTTTACGTCCTGGAGAACCAATGTGTGTTTTCTATTCGCGCTACGGCATATGTAAATTTGGACCAAGTTGCAAGTTTAACCACCCAATGGGAATTCTTAGCTATAATATATCTGCACCTCCTTCCGTTGACGCCACTGACAGACGTCTATTAGGATCTTCATCGACAACTGCTACATTACTTGAAGAGTCAAGCTCATCAAAACCGACGAAGCTTTCAATATCAGAGACAAGACATGATCCTTCTGATGATGACGACGACGACATTGATGAACATAGATGA 1065 0.4254 MEFHPIIPISQGSLWMMKLRPSETMDSESYPQRPGEPDCSYYIKTGLCRFGATCRFNHPPNRKLGIVSARTIGEFPERIGQPECQYYMKTGTCKFGVTCKFHHPRDQAEISGRVALNTLGYPLRPNEAECSYYLRTGECKFGNTCKFHHPQPSNMMLSLRSSPIYPTLHSPNPSYLPSSYTPLIIPGWNAYNGQMGSMISTPPASPLQGENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRQRLPIPASPDSLLSPMGLPLRPGEPMCVFYSRYGICKFGPSCKFNHPMGILSYNISAPPSVDATDRRLLGSSSTTATLLEESSSSKPTKLSISETRHDPSDDDDDDIDEHR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03247 354 SUPERFAMILY CCCH zinc finger 126 152 IPR036855 GO:0046872
Tsu01g03247 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 105 IPR000571 GO:0046872
Tsu01g03247 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 60 IPR000571 GO:0046872
Tsu01g03247 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 291 IPR000571 GO:0046872
Tsu01g03247 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Tsu01g03247 354 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Tsu01g03247 354 MobiDBLite consensus disorder prediction 317 333 - -
Tsu01g03247 354 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Tsu01g03247 354 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Tsu01g03247 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 10 201 - -
Tsu01g03247 354 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Tsu01g03247 354 Gene3D - 23 107 - -
Tsu01g03247 354 ProSiteProfiles Zinc finger C3H1-type profile. 78 106 IPR000571 GO:0046872
Tsu01g03247 354 SUPERFAMILY CCCH zinc finger 38 61 IPR036855 GO:0046872
Tsu01g03247 354 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Tsu01g03247 354 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 208 349 - -
Tsu01g03247 354 SUPERFAMILY CCCH zinc finger 267 292 IPR036855 GO:0046872
Tsu01g03247 354 Gene3D - 108 160 - -
Tsu01g03247 354 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Tsu01g03247 354 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Tsu01g03247 354 SMART c3hfinal6 78 105 IPR000571 GO:0046872
Tsu01g03247 354 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Tsu01g03247 354 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Tsu01g03247 354 PANTHER PROTEIN PHOSPHATASE RELATED 208 349 - -
Tsu01g03247 354 Gene3D - 214 300 - -
Tsu01g03247 354 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Tsu01g03247 354 SUPERFAMILY CCCH zinc finger 220 246 IPR036855 GO:0046872
Tsu01g03247 354 MobiDBLite consensus disorder prediction 317 354 - -
Tsu01g03247 354 PANTHER PROTEIN PHOSPHATASE RELATED 10 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03247 Tsu-Chr1 40254223 40257036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03247 14 351 C2H2 Transcription Factor Family AT3G02830 53.197 6.01e-138 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g03247 zf-CCCH 1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03247 - - gmx:100802536 515.768