Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03246 ATGCAGAATGATGAAGTTCGTGAGGAAGAAAATGTTTCGGCtactgatgatgatgaagttcTAAATGCACCTCCTCCTAAAGGACATGATGAAGTTCGTGTCGAAGAAAATGTTCCGGCTACTGATGATGAAGTTCTAAATGCACCTCCTCCTAAAGGACATGGTGCAAATCAAGATGAACAAGCTGTCAATATGCAGAATGATGCAAATGCAATGCTGGAAATTCATAGGGCTGAGAAAGGAAAAATGCCAATGAGTTATTCTGAAGGCGTGTGCGCGAAAAAAACCGTTGTAGCTGATAATGAAGTATCAACTGATGAAGAAGTTCCAAATGCAATTACTAATGATGAAGAAAGTCACATTGCTGGAATGATGCAGCTTCAACATGATGATGAAGGTGTTGGTGCTAGTGGTTCTTGTGCAAAAAGGAAGAGGGAGATGGACTTCTCTAAATACTATAAACCACTTCGTGGTAGGAACAACGTTGGGCCAAAAGTAGTGATCCGAGTTGAAAGCGACGAAGACATTTTGGACGATGGTTATCGCTGGATTAAGTATGGACGAAAGTATGTCAAAGCAAATCCTAATCACCCAAGGGCATATTTTAAGTGCATGGATAAAAAATGTGCTGTAAGAAAACAAGTAGAACGAGATGCACGcaattcaaaatttgttatCGTTTCTTATGAAGGGAAGCATAATCATGAGGTTCCGCCCAAGCATAGAAACTTCACACCCTTTACTCCGACCGTAGTATATAGGAATGAGAATGTCGGCGTGCCACCACCACCATTGGCATCGCCTACAACTCTCTCTTTCGCTCCCTTTAACCACCAACCAAACAACAAATTCATCCGTGGTTATAGACCCtataatattgattttgttcggccgGACAATTCTTTCTTGAACGTGACTCCGAGGCCTTATGCTGCTGCCCGTGTTGCTACCCCTCAAGCTGGACCTGTTATCGGTGGAGAAGTACCGTCTCCTGGATTTTCGTTATCGCCACCACCAACTGATGAGGAAGCTAAAGATGTCCCTAACAATGAATGA 1056 0.4081 MQNDEVREEENVSATDDDEVLNAPPPKGHDEVRVEENVPATDDEVLNAPPPKGHGANQDEQAVNMQNDANAMLEIHRAEKGKMPMSYSEGVCAKKTVVADNEVSTDEEVPNAITNDEESHIAGMMQLQHDDEGVGASGSCAKRKREMDFSKYYKPLRGRNNVGPKVVIRVESDEDILDDGYRWIKYGRKYVKANPNHPRAYFKCMDKKCAVRKQVERDARNSKFVIVSYEGKHNHEVPPKHRNFTPFTPTVVYRNENVGVPPPPLASPTTLSFAPFNHQPNNKFIRGYRPYNIDFVRPDNSFLNVTPRPYAAARVATPQAGPVIGGEVPSPGFSLSPPPTDEEAKDVPNNE 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03246 351 Gene3D WRKY domain 162 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g03246 351 Pfam WRKY DNA -binding domain 178 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03246 351 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03246 351 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 239 IPR044810 GO:0003700
Tsu01g03246 351 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 85 239 - -
Tsu01g03246 351 MobiDBLite consensus disorder prediction 22 40 - -
Tsu01g03246 351 MobiDBLite consensus disorder prediction 1 59 - -
Tsu01g03246 351 SMART WRKY_cls 177 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03246 351 MobiDBLite consensus disorder prediction 320 351 - -
Tsu01g03246 351 SUPERFAMILY WRKY DNA-binding domain 171 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03246 Tsu-Chr1 40251530 40253247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03246 178 242 WRKY Transcription Factor Family AT5G56270 46.154 1.98e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu01g03246 WRKY 1.9e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03246 - K18835 mtr:MTR_1g078260 210.69