Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03239 ATGTTTGTGTGTGTTAAATGTGTCGATTATGGTGTTATACTTATTTATTCATACAGGGAAGATAAATCAGAGACATTATTGCCGATTGGCTTTTGCATGAGGTCATTGATGGGGACCGAGCTTATGAGGATACGTGTTAAAGAAGATAATGATGATTTTCCGTCAGTTCCACCGGGTTTTGAGTCATATACATCTTTTGCACTGAAAAGAGTAGACGAGAACGAGAAACACAATGATAAAAATTTGACCAGTTCCTCTACAAGTGCTTCTGAATCGCAGTCAACTCAGGTCGGAAATGGTGTTCAAATTAGTGATACTGCAAAGGTTTCTAGATCCCTTCGACGAAGACCGTGGATTAACCATGGACAGTGTGAGAATGGTTCAGAGGAAGACTGTGATTGTGAGCGGCATGATCAAAATTTCTCCTCGAGACCCTGTCTTCCTAAAGGAGTCATCAGAGGATGTCCAGATTGCCCTAATTGCCAAAAGGTCATTGCCAAATGGCGACCAGAAGAGGCTCTTAGGCCTTATCTCGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAATTTCAAGATACTTTGAAATATATATCGAGTATTCGATCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCACAATCATGGAAACCCCCTTGTCCTCTGAAGCAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAAAGGATTGACAAACTTCAGAATCGTAATTCAGGGACAAAGAAGTCGAGGCttcaaaataatttgaaaaggaaaaggagACGATGCACAAGAATGGGAGTGGATAATGGCACTGAATCAGATCCTAATGCAGTATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGACCAGAGTTTACCTTGGAAACATTTAAGAGATATGCAGATGAGTTTAAGGTCAAATACTTCAGAAATGATAATTTATCTCATCCAAGTGCTAATACTACAACAACTGTAAGTAGTACCTCGGAGCCTTCTGTGGAGAACATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTAGAAACTGGGGTTTTTGGGAGCGGTTTTCCTAGCAACTCTAGTCAAGTTTCTGATTCAAATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGATCTCTGCTCTCTTATGAAACCAGTGATATATCTGGTGTTGTAGTGCCATGGTTGTATTTAGGAATGTGCTTTTCGTCATTTTGTTGGCATGTGGAAGATCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAAATGTGGTATGGTGTCGCTGCAAAAGATGCATGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCTGAACTCTTTGAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAACTTTCTCCTTCTATTCTTAAGTCTAAAGGTGTGCCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGCTTCAACTGTGCTGAGGCTGTTAACGTAGCTCCTGTGGACTGGCTGCGCCATGGGCATATTGCTATAGACCTGTACCGGGAGCAGAGGCGCAAGACTTCCATATCTCATGATAAGCTATTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCCCAGTGGGAGATCACTTTGCTTAGGAAAAACACTTCGGATAATCTAAAATGGAAAGATGTCTGTGGAAAGGATGGTCTTCTGGCAAACGCATTCAAGGCACGTGTTGAGACGGAGCGAGTAAAAAGGGAATTTCTCTGCAGTTCTTCAAAAGCATTAAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGTAGTGTCTGTTTTTTTGACTTACACCTATCTGCTGCTGCCTGTCACTGTTCCACAGATAGATTTGCTTGCTTGGATCATGCAAAGCAGTTTTGTTCATGCTCTTGGAGCTCtaaatttttcctttttcgTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAATCGGACCTTGGGCTGGCACTAACTTCTTATATCTCACTAgataataaaacaataattcaggaattgaaattgcattcatCCAACTCGTCTCATTCTTCCACGAGCAATGTGAATAAAGAGGTGGCTTTGCATccatcaaataaatttattgacaATGCTCAATCGTCAGATGTTCCAATAGTGGATCGAGCAAATTTGGCTAATAGTAAGGATCTGAGCTATCATAAACAGAAGAAGTCAGCAGAAGCTGTGTCTCCTTCGAGTCACAAGAAAGAACTGTCAACATTTAATAGCTCTAAACCTACTCACGAAATGGCTAATCGTAAGATCCGTGTTATTAAAGAAGAATCTGTTATTTGCACATCAAAGCCGAGTGCCCCTGTTTGTGAATTAAATCAAGAGGATTCTTCATATGCTTTATCTCCACCTTTAGCTCAAAATGGGGATGACAAAATTTCACATTCCAAACCAAATGTTATACTTCTTAGCGACGACGAAGACGATGAAATGAAGACATCAGATTCAAATAGAAGGAAGGAGGTTCCTCATATGCTTGCTGGCTCTAGAAATAAAGCAAGCCTGTGTAGTGATATAGAATATAAAAGCCTGACCATTCCTGTGACAGATGCTTCTGTGACGGGAGAGAAGGATGCTATTGTGGTGCGTCGTGAAGATTCAGGTTCGAGTTCAACTAAGCTTTTGCATGTAAAACAAGAATGTCACGAACAGAGAGGACCAGTTCTACCTTCAACCCCAGTAGATCTTTCTTTTCATATAGGTCTTACTAGTACAGAACCAGTTAGAAGTATTCCAGCTTCTTCAAGAGCAGATGCCGGTGGTCATAGTTTAGAAAGTTCAGAGGTTTGTCCTCCGAAACCACAACCTTCCGGCCCTATTAAGGCTAAGACCGAAGATAATCATGAGAAGTTTGATGGATGTTCTACTTCTAATGTAGCAGACAATGCAAGAGCTGTTATTGGAAATATCTCTTGTGGTCCAAACATTCACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTTCGGCGCATCAACTGCAATGTTGAGCCTTTGGAATTTGGAGTTGTTCTTTCTGGAAAATCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTATTATATTTCAGAAATTCTTGATGCCGAACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATAATCCAAATGAGGTCTTCATTCATATGTCAGCGACAAAATGCTGGGATATGGTAAGAGAGAGAGTGAATCTAGAGATAGCAAAACAACATAAGCTGGGAAAAAAGGGTCTTCCTCCTTTACATCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAgGCTATTGAGGCACTGGATCGAAGTCGAGTTTGCAATGAATATTGGGATTCCCGGCCATTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTGGCCAGAGCACTGTAAATGGTGGAGGCGGAAATGATCAAGGGGTTCCTGCCACCGTTGGAGCTGTTGCAGTAATAAAGAGTCTATTTAAAAAGGCGAGTGCGGAAGAATTGAACTCATTGTACAGCATTCTTACCGACAACAAGCCAGCAGCTGAACAGATCCCAATTAAGCAAATTCTCTATGAAGAAATTCACAAAACCAACCACCCTAGGTGA 3879 0.4073 MFVCVKCVDYGVILIYSYREDKSETLLPIGFCMRSLMGTELMRIRVKEDNDDFPSVPPGFESYTSFALKRVDENEKHNDKNLTSSSTSASESQSTQVGNGVQISDTAKVSRSLRRRPWINHGQCENGSEEDCDCERHDQNFSSRPCLPKGVIRGCPDCPNCQKVIAKWRPEEALRPYLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPQSWKPPCPLKQKSIWEGSKFATRVQRIDKLQNRNSGTKKSRLQNNLKRKRRRCTRMGVDNGTESDPNAVFCEVERFGFEPGPEFTLETFKRYADEFKVKYFRNDNLSHPSANTTTTVSSTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPSNSSQVSDSNEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYLGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVAAKDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLRHGHIAIDLYREQRRKTSISHDKLLLGAAREAVRAQWEITLLRKNTSDNLKWKDVCGKDGLLANAFKARVETERVKREFLCSSSKALKMESSFDATSERECSVCFFDLHLSAAACHCSTDRFACLDHAKQFCSCSWSSKFFLFRYDISELNILVEALEGKLSAVYRWAKSDLGLALTSYISLDNKTIIQELKLHSSNSSHSSTSNVNKEVALHPSNKFIDNAQSSDVPIVDRANLANSKDLSYHKQKKSAEAVSPSSHKKELSTFNSSKPTHEMANRKIRVIKEESVICTSKPSAPVCELNQEDSSYALSPPLAQNGDDKISHSKPNVILLSDDEDDEMKTSDSNRRKEVPHMLAGSRNKASLCSDIEYKSLTIPVTDASVTGEKDAIVVRREDSGSSSTKLLHVKQECHEQRGPVLPSTPVDLSFHIGLTSTEPVRSIPASSRADAGGHSLESSEVCPPKPQPSGPIKAKTEDNHEKFDGCSTSNVADNARAVIGNISCGPNIHRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYISEILDAERGSPLFMVSLENNPNEVFIHMSATKCWDMVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPFSRPQGQLSQAGQSTVNGGGGNDQGVPATVGAVAVIKSLFKKASAEELNSLYSILTDNKPAAEQIPIKQILYEEIHKTNHPR 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 800 816 - -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 785 799 - -
Tsu01g03239 1292 ProSiteProfiles JmjC domain profile. 392 555 IPR003347 -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 878 898 - -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 981 1021 - -
Tsu01g03239 1292 SMART fyrc_3 1123 1217 IPR003889 GO:0005634
Tsu01g03239 1292 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1047 1288 - -
Tsu01g03239 1292 PANTHER LYSINE-SPECIFIC DEMETHYLASE 119 824 - -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 75 103 - -
Tsu01g03239 1292 Pfam C5HC2 zinc finger 645 695 IPR004198 -
Tsu01g03239 1292 Gene3D - 1066 1203 - -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 81 103 - -
Tsu01g03239 1292 Pfam F/Y-rich N-terminus 1072 1114 IPR003888 GO:0005634
Tsu01g03239 1292 SMART cupin_9 392 555 IPR003347 -
Tsu01g03239 1292 ProSiteProfiles FYR domain FYRN motif profile. 1059 1117 IPR003888 GO:0005634
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 785 818 - -
Tsu01g03239 1292 Gene3D Cupin 166 539 - -
Tsu01g03239 1292 ProSiteProfiles JmjN domain profile. 181 222 IPR003349 -
Tsu01g03239 1292 PANTHER JUMONJI 14-RELATED 1047 1288 - -
Tsu01g03239 1292 PANTHER JUMONJI 14-RELATED 119 824 - -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 1212 1232 - -
Tsu01g03239 1292 Pfam F/Y rich C-terminus 1122 1205 IPR003889 GO:0005634
Tsu01g03239 1292 Pfam jmjN domain 182 215 IPR003349 -
Tsu01g03239 1292 SMART fyrn_3 1073 1117 IPR003888 GO:0005634
Tsu01g03239 1292 Pfam JmjC domain, hydroxylase 422 538 IPR003347 -
Tsu01g03239 1292 MobiDBLite consensus disorder prediction 1212 1233 - -
Tsu01g03239 1292 SMART JmjN_1 180 221 IPR003349 -
Tsu01g03239 1292 ProSiteProfiles FYR domain FYRC motif profile. 1119 1209 IPR003889 GO:0005634
Tsu01g03239 1292 SUPERFAMILY Clavaminate synthase-like 298 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03239 Tsu-Chr1 40162080 40172988 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03239 37 1286 JUMONJI Transcription Factor Family AT1G08620 53.510 0.0 1215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu01g03239 JmjC 4.5e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03239 - - gmx:100800271 1930.61