Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03235 ATGGGTCTTTTCAACAAAGTAACAGAGCTCTCTGTTCTGTGTAAAGCAAAAACTGCACTCATCGTCACTTCACCCGATAATAAACTCTATGTATGTGGCTATCCTAATTGTGACGCCGTCATTCAACAATATTTGACCGGAAAAGACATCGTGGAAGACGGTGAGAAAAAGAAGCAAGAGGAGATTAATGTTGAAACCCTAAGACTTGAATATGAGGCAATTGAAGATAaacttgaagaagaaaagaagaattttgaagatatcatcactaatgagaaAGAGAAGGGTGATTCTATTTTCCCTTATTGGTGGGATGATTCTATTGATGATATGGATTTAGAAACTCTTGAAGAATTCACAGCTTCTTTACAAAATTTGAGGCTCAATTTAGGTTCTGCCATGGACGAAAAGAAGTTAATGTTCACATTCCAATGA 435 0.3333 MGLFNKVTELSVLCKAKTALIVTSPDNKLYVCGYPNCDAVIQQYLTGKDIVEDGEKKKQEEINVETLRLEYEAIEDKLEEEKKNFEDIITNEKEKGDSIFPYWWDDSIDDMDLETLEEFTASLQNLRLNLGSAMDEKKLMFTFQ 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03235 144 PANTHER MADS BOX PROTEIN 2 139 - -
Tsu01g03235 144 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 139 - -
Tsu01g03235 144 Coils Coil 116 136 - -
Tsu01g03235 144 SUPERFAMILY SRF-like 2 46 IPR036879 GO:0003677|GO:0046983
Tsu01g03235 144 Gene3D - 1 71 IPR036879 GO:0003677|GO:0046983
Tsu01g03235 144 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Tsu01g03235 144 Coils Coil 57 95 - -
Tsu01g03235 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03235 Tsu-Chr1 40097483 40097917 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03235 2 127 Type I MADS-box Gene Family AT5G60440 31.061 5.16e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03235 SRF-TF 5.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03235 - - cam:101507050 164.466