Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03234 ATGAGTCTTTTCAACAAAGTAACAGAGCTCTCTATTTTGTGCAATGCAAAAACTGCACTCATCGTCGCATCACCCAACAATAAACTCTATGCATGTGGCTATCCTAATTGTGACACTGTCATTCAACAATTTTTGACCGAAAAAGACATCGTGGAAGACAGTGAGAAAAAGAAGCAAGAGGAGATTGTTGAAATCCTAAGGCTTGAATATGAGGCAGTTGAAGATAaacttgaagaagaaaagaagaattttGAAGCTATTGAGAAAGAGAAGGGTGGTTCTATTTTCCCTTGGTGGGGTGATTCTATTGATAATATGGATTTAGAATCTCTTGAAGAATTCGTGGCTTCTTTACAAAATTTGAGGCTCAATTTAGGTTCCGCCATGGACGAAAAGAAGTTAATGTTCACATCCAATGATCAATTTAACCCATTGTCAAATTTAATGTAA 450 0.3489 MSLFNKVTELSILCNAKTALIVASPNNKLYACGYPNCDTVIQQFLTEKDIVEDSEKKKQEEIVEILRLEYEAVEDKLEEEKKNFEAIEKEKGGSIFPWWGDSIDNMDLESLEEFVASLQNLRLNLGSAMDEKKLMFTSNDQFNPLSNLM 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03234 149 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 135 - -
Tsu01g03234 149 SUPERFAMILY SRF-like 3 46 IPR036879 GO:0003677|GO:0046983
Tsu01g03234 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 31 IPR002100 GO:0003677|GO:0046983
Tsu01g03234 149 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Tsu01g03234 149 PANTHER MADS BOX PROTEIN 3 135 - -
Tsu01g03234 149 Coils Coil 56 90 - -
Tsu01g03234 149 Gene3D - 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03234 Tsu-Chr1 40080236 40080685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03234 2 122 Type I MADS-box Gene Family AT5G60440 32.558 2.52e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03234 SRF-TF 7.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03234 - - cam:101507050 155.606