Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03232 ATGGGTCTTTTCAATAACGTAACAGAGCTCTCTGTTCTGTGCAACGCAAAAACTGCACTCATCGTCGCATCACCGAACAATAAACTCTATGCATGTGGCTATCCTAATTGTGACGCTGtcattcaacaattttttacCGGAAAAGACATCTTGGAAGACGGTGAGACAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGAGACAATTGAAGATAagcttgaagaagaaaagaagaattttGAAGCTATTGAGAAAGAAAAGAGCGGTTCTATTTTCCCTTGGTGGGGTGATTCTATTGATAATATGGATTTAGAATCTCTTGAAGAATTCATGGCTTCTTTACGAAATTTGAGGCTCAATTTAGGTTCCGCCATGGACGAAAAGAAGTTAATGTTCACATCCTAG 417 0.3597 MGLFNNVTELSVLCNAKTALIVASPNNKLYACGYPNCDAVIQQFFTGKDILEDGETKKQEEIVETLRLEYETIEDKLEEEKKNFEAIEKEKSGSIFPWWGDSIDNMDLESLEEFMASLRNLRLNLGSAMDEKKLMFTS 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03232 138 Gene3D - 1 93 IPR036879 GO:0003677|GO:0046983
Tsu01g03232 138 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Tsu01g03232 138 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 134 - -
Tsu01g03232 138 SUPERFAMILY SRF-like 2 46 IPR036879 GO:0003677|GO:0046983
Tsu01g03232 138 PANTHER MADS BOX PROTEIN 2 134 - -
Tsu01g03232 138 Coils Coil 56 90 - -
Tsu01g03232 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 31 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03232 Tsu-Chr1 40066980 40067396 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03232 2 122 Type I MADS-box Gene Family AT5G60440 31.783 2.10e-18 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03232 SRF-TF 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03232 - - cam:101507050 154.451