Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03231 ATGTTAAGAGGAACCAACCGCGTTTTGCAGTCAAGCCATGAGCTCTTTGTTTTGTGCAAAGCGAAAACTGCACTCATCGTCACATCACCTGACAATAAACTCTATGTATGTGGTTATCCTAATTGTGACGTTGTCATTCAACAATTTTTAACCGGAAAAGACATCGTGGAAGACGGTGAGGAGAAAAAGAAGCAAGATGATATTGTTGAAACTCTAAGACTTGAATATGAGGCAATTGAAGATAaacttgaagaagaaaagaagaatttCAAAGCTATTGAGAAAGAGAAGGGTGATTCTATTTTCCCATGTCGGTGGAGTGATTCTATTGATGATATGGATTTAGAATCTCTTGAAGAATTCACGGCTTCTTTACAAAATTTAAGGCTCAATTTAGGTTCTGCCATGGACGAAAAAAGTTAA 423 0.3546 MLRGTNRVLQSSHELFVLCKAKTALIVTSPDNKLYVCGYPNCDVVIQQFLTGKDIVEDGEEKKKQDDIVETLRLEYEAIEDKLEEEKKNFKAIEKEKGDSIFPCRWSDSIDDMDLESLEEFTASLQNLRLNLGSAMDEKS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03231 140 Gene3D - 5 78 IPR036879 GO:0003677|GO:0046983
Tsu01g03231 140 ProSiteProfiles MADS-box domain profile. 1 41 IPR002100 GO:0003677|GO:0046983
Tsu01g03231 140 Coils Coil 118 138 - -
Tsu01g03231 140 SUPERFAMILY SRF-like 8 50 IPR036879 GO:0003677|GO:0046983
Tsu01g03231 140 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 14 139 - -
Tsu01g03231 140 Coils Coil 62 96 - -
Tsu01g03231 140 PANTHER MADS BOX PROTEIN 14 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03231 Tsu-Chr1 40051808 40057042 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03231 8 129 Type I MADS-box Gene Family AT5G60440 28.682 9.19e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03231 SRF-TF 3.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03231 - - cam:101507050 141.354