Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03211 aTGGAATCATCCCTTGAACAGCACCAACTCTCTTTAGGCTCAATGGAACACACCAATTATATCACCAAAGGGAAAGGAAGCAAATTGGTTATTAGAGGAATAGGAGCAAGAGCATGGTACAATATGTATGAATGCACAACAtgtaacaaagttttctctaaATTTCAAGCACTTGGTGGCCATATAACAAGTCACAAGAAAGCTAGTGCCTTGGAAATTGCTCAAGATGATGGtaacaacaacagcagcagaatcaacaacaaatacaagcttcatgaGTGCTCCATTTGTGGATCTGAATACACATCTGGACAAGCCCTTGGTGGACATATGACGTGCCACCGTGCACCGGTCAAGACCGCAACCTCCTTAAAACCAATGGCTTTGAAACCTTATAAACCTAGAAAGAAAAGGCATGTATTGCCTTTAAATTTTGATCTCAACCTTCCAGCTGCACCAGGAGATGAGAAAAGAGAATCCAAGTTTGCCTTTGCAAATTGTATCCATGCAACAACGGGAACAAACAAGTCTTGTATTATCTGCACCATCCTTGGTGAATTTTCATTACTGTAA 573 0.3682 MESSLEQHQLSLGSMEHTNYITKGKGSKLVIRGIGARAWYNMYECTTCNKVFSKFQALGGHITSHKKASALEIAQDDGNNNSSRINNKYKLHECSICGSEYTSGQALGGHMTCHRAPVKTATSLKPMALKPYKPRKKRHVLPLNFDLNLPAAPGDEKRESKFAFANCIHATTGTNKSCIICTILGEFSLL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03211 190 Pfam C2H2-type zinc finger 92 117 - -
Tsu01g03211 190 Pfam C2H2-type zinc finger 43 67 - -
Tsu01g03211 190 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
Tsu01g03211 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Tsu01g03211 190 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Tsu01g03211 190 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Tsu01g03211 190 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 36 78 - -
Tsu01g03211 190 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 84 159 - -
Tsu01g03211 190 PANTHER ZINC FINGER PROTEIN ZAT5 84 159 - -
Tsu01g03211 190 PANTHER ZINC FINGER PROTEIN ZAT5 36 78 - -
Tsu01g03211 190 SMART c2h2final6 92 114 IPR013087 -
Tsu01g03211 190 SMART c2h2final6 43 65 IPR013087 -
Tsu01g03211 190 Gene3D Classic Zinc Finger 40 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03211 Tsu-Chr1 39702114 39702686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03211 40 162 C2H2 Transcription Factor Family AT2G28200 42.424 1.96e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g03211 zf-C2H2_6 5.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03211 - - vra:106771093 143.28